1. Home
  2. Mutant Lines
  3. 16-2179-1

16-2179-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 114817 [Map]; Strand: c
      • AT4G00250.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: -851; Region: promoter
      • AT4G00260.1 - [+] show detail - Transcriptional factor B3 family protein
        Distance: -154; Region: promoter
    Flanking Genome Sequence: 16-2179-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAC CATTGAAGAG ACTTTTATTG TGGTTAAACA 
    CTCTGGTTCG GTTCAGGACT TTCAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1524382 [Map]; Strand: w
      • AT4G03438.1 - [+] show detail - MIR447C; miRNA
        Distance: -879; Region: promoter
      • AT4G03440.1 - [+] show detail - Ankyrin repeat family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 16-2179-1 - 3-prime edge 
    ATNAAAACGG NANAGGTATT TNACCGACCG NTCCGACCGT TTTCATCCNT 
    ANGNTGNNAG CNCTNCTNNT TAACGNCCCG GGCCNNGAGA CAANTCNTGC 
    NTTTTNATNG CTGANTGTTN ATGAAGANNA TGATNAANAA CNTTACACCA 
    CCGGCTTCAT CNCACANNGN GTNTNAAGAG NGGGGANTCC ATGGGATCTN 
    CAAGCGGGGT NNAANCGGAA AAGTCNAAAG TGCTTNANAG AGATTGCATC 
    GTTNNNAAAT TAGCTTTCCT TATCTTGGGT CACTAAAGTC TTGNNATTTA 
    CTTTCCTGCT TGTAATAAAC GCGGCTACTG TNAATGTTNN TTCTTGGTNG 
    TNTGNACNAT CGTNCTTAAN AATGTAATAN NCNACAAAAA AAAANAAAAA 
    NNNGGNCAAA AAANNNNGNN AAAANNNCTG GATNTTAAAT GGCNNCATNT 
    NTNNNCCTTN ATNTACNAGG ACNTNNNNNN NTNNAAAAAG ANNGGGAANN 
    TTTGGNNNAA CCCCGAANAA ATNTTAAAAN TTGGTNCCTT TTNNGNTTNT 
    TATTANNANN CGCNCCNNAN NTTTTTTNGT TCCACCCCTN NANTNNNTCG 
    GNCNCNTNNA AANNTNAANT NNNAANTTNA AGAAANNCTC AAANNNCTTN 
    TNCTTTTCCN GNCNTCNCTA NTTTNNAANT ANACCCACNN ACATCNNAAN 
    ATCNNTANNT NCNTCCNTTA GTGNNNGGAC CTTTATTCAA NAACCCCTAC 
    CCCNCCNTTT TTNGANNTNA NTANNCNNTT ANTNNCACGN NCCNATACTN 
    ANNNCNTTTT TNNNGNGCTN NT

AT4G00250.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00238.1); Has 626 Blast hits to 580 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 135; Fungi - 97; Plants - 294; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00260.1

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein
Computational Description
maternal effect embryo arrest 45 (MEE45); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1); Has 539 Blast hits to 263 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03438.1

Model type
miRNA
Short Description
MIR447C; miRNA
Curator Summary
Encodes a microRNA that targets several 2-phosphoglycerate kinase-related family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGGGACGACAUCUUUUGUUG
Link
InterPro Scan - TAIR

AT4G03440.1

Model type
Protein coding
Short Description
Ankyrin repeat family protein
Computational Description
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03480.1); Has 18202 Blast hits to 9223 proteins in 460 species: Archae - 22; Bacteria - 1330; Metazoa - 10010; Fungi - 1278; Plants - 2395; Viruses - 41; Other Eukaryotes - 3126 (source: NCBI BLink).
Link
InterPro Scan - TAIR