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16-1714-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22530720 [Map]; Strand: w
      • AT3G60955.1 - [+] show detail - pseudogene, cytochrome P450 family, similar to Cytochrome P450 76C3 (SP:O6463...
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 3; Position: 22591901 [Map]; Strand: w
      • AT3G61030.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: 1048; Region: intergenic
      • AT3G61035.1 - [+] show detail - Cytochrome P450 superfamily protein
        Distance: 351; Region: intergenic
    Flanking Genome Sequence: 16-1714-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAT 
    CAAGAAGTTT GATAAAAAAA TCTTGCTTGT ATGATAAAAA GGTTGTCTCT 
    GTTTGTCCTT TTTCGTTTTT GTTTACTTTA GAATGTGTTG TTCCATGATT 
    ACTTCTTAAA ATCTTAAGTT AATTAGTTTT GGATTTAGTT GTTGTGCTCA 
    TCTTCATTGA AAGGCTGTGA ACTTCAAAGA AGAAGAAGAA GAAGGAATGC 
    AAAGTGTACG TGGCCATAGC AACCATGAGT TTTTTCGTTA TCTCATTTGA 
    TTGCTTTGTA TTTTGTTTTC CTCTTTAGAG ATAATTTGTT CCTTGTTTCA 
    TTGAATTTTT ATGTTAAAAT TTTATATCAA TAAAATGATT TGGTTTTCTA 
    TATATTATGA ATTGAATATT GGAATT

AT3G60955.1

Model type
Pseudogene
Curator Summary
a cytochrome P450 pseudogene. overlaps with a real gene on the other strand.
Computational Description
pseudogene, cytochrome P450 family, similar to Cytochrome P450 76C3 (SP:O64638) (Arabidopsis thaliana); blastp match of 33% identity and 7.2e-27 P-value to GP|17065916|emb|CAC80883.1||AJ251269 geraniol 10-hydroxylase {Catharanthus roseus}
Link
InterPro Scan - TAIR

AT3G61030.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 4067 Blast hits to 3968 proteins in 1320 species: Archae - 109; Bacteria - 2078; Metazoa - 577; Fungi - 310; Plants - 450; Viruses - 0; Other Eukaryotes - 543 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61035.1

Model type
Protein coding
Short Description
Cytochrome P450 superfamily protein
Computational Description
Cytochrome P450 superfamily protein; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 1 (TAIR:AT2G45560.1); Has 7376 Blast hits to 7343 proteins in 467 species: Archae - 0; Bacteria - 4; Metazoa - 2563; Fungi - 270; Plants - 4442; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Link
InterPro Scan - TAIR