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16-1442-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11035694 [Map]; Strand: w
      • AT4G20480.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 0; Region: intron1 (5UTR)
      • AT4G20490.1 - [+] show detail - transposable element gene
        Distance: -989; Region: promoter
    Flanking Genome Sequence: 16-1442-1 - 5-prime edge 
    CTTCTATCTA TGCAATCAGT CTATGAATTT TGCTTAGAAA ATCAAACATC 
    AGAAAGATAA ATTGACCACC GATCGAGAGA GGTAGATATA GAGGAACACA 
    GCTGCTAATC GTGTTCTATC TATGCAATCA GTCGATGAAT TTTCAAAGTA 
    ACATGATGAG ATAAGAACCG AGAATTTTAC CTTAGAGAGA GCCACGTTCT 
    ATTATGCCAT CATTTTAGAA AATCTATTCT GAATACCATC CATTTATTCT 
    AAGTACCATT CGACCATGTG TAATTACATC TCTCTCTTTA ATGAATAACT 
    GAGGGAGAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11035578 [Map]; Strand: w
      • AT4G20480.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 16-1442-1 - 3-prime edge 
    GATAGAAGAA CCCTACAACT TCTATAGCAG TCGTGTTCCT CTCGGTTCTC 
    TGATGTTTGA CTGAATTGAA TTTGATTCTT TTTTTTTTAA GGTTTGATTT 
    TCCGATNATG AGGGNGATGG ANCCTCCGCC TATCGAGGAG GCAGCTTTTG 
    GCCCCAGTAT CGGNCTTCTG GGACATAAAA TCGTTTCCGG TTCCCNATGG 
    CTATNATGCT CNACTGGNGG GTCCGNGTNT CAAACGGAAT TTGAGGAAGT 
    TAGGCTACAC AGGTCCTATC ACCATCACTG CCGTNGGCGT ACTATCAAAG 
    GTCCCTCGNG ACATCCTTAA AGCAGNGTNT TCCACTGGAA TCTNTNTTAA 
    GGAGGTCATT AAAAGTTAGT ATCTTCTCAT CCTTATTCCA TAGCTANAGT 
    CTTAANGGGA TTCTCTTAAT TCTCTAGTTT CTCAACAGGT CCNACAAACA 
    TGTATGCTCT TTTCCTTGAG TCCTCTNTTN TTCGTACTCC ACCTCCAGCT 
    AATATGANGG TCATATCCCG TCCACCATCC TACATTCCTC GACACTTNTT 
    TTNTATACGT GACAAGGACC GNGAAAAGGG TCGCTACACT ATTTTCCCGT 
    TTCCATTCGG ANAAATGCCT TTGACTCTTG CAATCANCCT CTGGGAANAC 
    TTCCTTCTGG CAGGTCTGGG TTTCTCCTCA TTGAATGAAT N

AT4G20480.1

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20490.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.5e-29 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)
Link
InterPro Scan - TAIR