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16-1196-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3254108 [Map]; Strand: w
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-1196-1 - 5-prime edge 
    GGTAAACGCA AGAGAANCGG ACANGGNGGN NCANACACCG NNCGCAGGAT 
    AANCAGGNNC GGGCANGCNN ACAGGNNCAT GAGAGTAGAT GGANCACCNN 
    CACCNGGGCC GTAGAGNNCN CGNGCGCTAN ANCCNGNGNN AANGANGCGT 
    NCNCTANAGC AGTTGGGNGG AGAAGNNGAA CNGGGNTTGN AANACTAGCT 
    GAGANGGTNT GATATGCCTC TTCAGTTTCT ATGAACNGNN GAGTATTGTC 
    GNNAATCCCA CCACTCGATG GNATCGAACT TTCCCTAAAT GCAACNATCA 
    ACTAGNCGCT GCCGACAAGG GTGAGAGACA CGAGTGCTTN AAAGNCGGAT 
    GCCCTACTCC NGGATNNGGC AAAGACAANA TCAGTGGCNC TTACAAAGCC 
    AGNNNGGNTA TATAATTNCG NTGAGGNTAG ACCTAAATGA CAAGCCTACT 
    ACTTGNGAAG NNNNNNATNT TGNCNCNAAC GGCTTGGAGG TACGNNATNC 
    CCNAGNGTCN NNTAATTTNA TGNNTTCACA NCNCAAGATA CTGGNANATG 
    NAAGACGGGT CAANNAGATT GGGAANTGTC TTTGNNNNAN GAGGGNGNAA 
    CCATGGTTNG GGNTTTTGGA NTGTGNANNN GNNAANCGGG NANAGGNANN 
    NTGTNAGCGC GCCTTNNNAN TGNNTGTGAN GAANAGTNTN NNGGNNNNAG 
    GGANACANNN GAGNTNGGAN GNGNAGNANN NAANNGAAGG GGGCNGANGG 
    ANANGTNGGG AGNAAGAANG AAAAAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3253939 [Map]; Strand: w
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-1196-1 - 3-prime edge 
    GTTCATACAG ACTTGAACTT GAGGAGGGTT TTCACATCAA GCCTCACCAT 
    TATATGATAC TCTATCACAT CGTGTGGTAA CAATTCTTCC ATACTTGTCT 
    CTGAATCTCT CAATGTTATA GATTGAAGAC AAGAGCCTCC GTATGCTTTA 
    TTTATAAACC AAACCTATCA CCCTAGTCAG AGTCCGAGAA AAATAAAAGG 
    GTAGATCAGT AAATCTAGAA ACTGTTTTCT TTTTTTTTTN GATTTTATNA 
    ATTNGAAAAA TCTTAAAATT TTAANCGGNT TTCNTCAAAT CAGTNTGANA 
    AAAGTAAAAT TTTCAAANGG AAAAANAAAA ATAAATNTAA TTNTNCTAAA 
    CNTTCNATTC AANCTTATNT NGATCNAATT ATNTTATNCA TTNAATTGNA 
    NCTNGTCCCT ATNTTATTNA ATNNCNCATT CNATTNAANC TTATNTTCNA 
    NCNAATCTAT TNTTCATNCA ANCNNAATTN GTNCCNANCT AATTNTNTTA 
    CAATTNTGTN TTNNAACATC GANCCCTAAA ATTNCGGTTT TNNANATTGG 
    AATTTTTTTT CCCCNNTTTT TTNTTNTTTT NNANNANTNG CAGGGNCANT 
    TNGCCCCCCN NGAAATTNTT TNGGTTTATT TAAACCCCNA TTGGACGTCC 
    CAACTTAAAA TNGNNCNNCN ANCCTTTTTG GGGGTTNTTA AGGGCNNAGG 
    GGGGGGGGGT NNTAACTGGT NCNCTGATTN CCCGNNANNN CCCCCGGGCT 
    TTTTTTCNCC TGGTNG

AT5G10340.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR