1. Home
  2. Mutant Lines
  3. 16-1081-1

16-1081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 271445 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 16-1081-1 - 5-prime edge 
    TNTATAAACT AACAAAATCG GTTATNCGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATGTAA TCAGGAGCAA AAAAATTTGC ATTCTTAAGC 
    CCCAAACATT AAATTAAATT TTGAGACTGT TGGGAGTTAA ATAAATGACT 
    AACTTAAGCA AAAACAAAAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 271494 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon3 (3UTR)
      • AT4G00651.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-1081-1 - 3-prime edge 
    CCTGTAATTG ACATTTAAGA TGCTAATGTT ATTGCTTCAG AGGTTTTAGT 
    CAACCTCAGA TACATCGATA TCACTATCTA AATAGACCTC TGGCTCTTGG 
    TCATCTGGAT TCTCTTCATC TTCTGTCTCT GTTCCTTCTT GTTCTCGTTG 
    CACTGCTCGA GCAATTGCGG ATTCCAACCT TGTGCTTACA GTTTCCCATG 
    ACACAAGCT

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00651.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR