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16-1011-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20250007 [Map]; Strand: w
      • AT1G54220.2 - [+] show detail - Dihydrolipoamide acetyltransferase, long form protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G54220.1 - [+] show detail - Dihydrolipoamide acetyltransferase, long form protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G54230.1 - [+] show detail - Winged helix-turn-helix transcription repressor DNA-binding
        Distance: -511; Region: promoter
    Flanking Genome Sequence: 16-1011-1 - 5-prime edge 
    TCTAAGAAGC AAGCTGACAC ATAAATCACA AATGATCATA GAGCTCTAAA 
    TCTAGCTAAT TTTAGCACAT TGCCCGTAAG TAAAAACAAT TCTAGATTAT 
    TACAATTCAA CTGAATTTCT AAAAGCAGAA AGAATT

AT1G54220.1

Model type
Protein coding
Short Description
Dihydrolipoamide acetyltransferase, long form protein
Computational Description
Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, acyltransferase activity; INVOLVED IN: pyruvate metabolic process, metabolic process, acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT3G13930.1); Has 21519 Blast hits to 19723 proteins in 2310 species: Archae - 104; Bacteria - 12081; Metazoa - 737; Fungi - 478; Plants - 377; Viruses - 0; Other Eukaryotes - 7742 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54220.2

Model type
Protein coding
Short Description
Dihydrolipoamide acetyltransferase, long form protein
Computational Description
Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, acyltransferase activity; INVOLVED IN: pyruvate metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT3G13930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54230.1

Model type
Protein coding
Short Description
Winged helix-turn-helix transcription repressor DNA-binding
Computational Description
Winged helix-turn-helix transcription repressor DNA-binding; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: leaf whorl, sperm cell, flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT1G54240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR