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16-0873-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 56886 [Map]; Strand: w
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -3437; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 313; Region: intergenic
    Flanking Genome Sequence: 16-0873-1 - 5-prime edge
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTNTA AAGGAGAAAA AGCAAACCTT TGTTNCGTCG
    GAGAAAAAAA AAGGTTAGAA ACTGGCGCAC ACAAAAATGT ATTGNGGNCC
    AAATAAATAA AATAATACAA GACCCATGTG ACATCATGGA GACATATGTT
    TATAAATTAA AAATAGACCC CTCGCAAAGA CACAAACCAC AACAAACGTC
    TAACCATTAT ATAATCATAT AATCACAATA ATGAGCAGTA GCTTTCTGCC
    TCGCATCAAA ATCAACACCC CATTCATTTT TAATTANAAA AATATAGTAT
    TGAGCTAATC CAAGCATTAT TNTATCACGT NATTTAGTCG ATCAAAAATA
    ATCCCCACAA TTAATATATA TNGAATGNGT TNTACAATAA GTGTTNGATA
    ANCANACAAT NANTNANCTN NTCACAAAAA TNNATGNTNG CGTGANAAAC
    CCGGGCNNTA ANCNACNNGN GCCNGANCAN AATGNGCTCA AAATCTTNAA
    NTTTGGGGTT TNGAANAAAT TGACTTACGG GGNCNNTTTT TTNAATAATG
    CGAAACTCCG GGGGAAATCA GGAGGAGCGA CATNTCCATG CTGAAACTCC
    GACGAGTTNT GTCCANCCCG GGCCGNNNCC NNCNTGCCCT AA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 56941 [Map]; Strand: w
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -3492; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 258; Region: intergenic
    Flanking Genome Sequence: 16-0873-1 - 3-prime edge
    TTTTNTTTNN NAAAAANNAA TNAANANANN CAANAAANAN AACNTTTGTN 
    NANNNNTTTT TAAGCGGANG GAGTNTTTAA CTNGACCGNT ACCGACCGNT
    TTCATCCNTN ANACGGTCCA TACGCATTAC ATATATAATG CGCCCATCTG
    CTNTACGCAT TAACNTGCAT NTCNCTATAG AAATATTTCA NAAACAAACC
    AAGNGTATAC AANACATCAA CATGTANNTT TTGGGGNTTT AANGNNAAAG
    ACNNCANTNC AANAAAAAGA TNACNAGCNA ANNNANGTTA NACAANCCAA
    CAGNATTTAA GGCTNACTCA NTNTATGAAA ACANNATTNA GGATAATNAT
    TNAGANGGNA NANGNANACA NGNNANGGAC CTAATCACNN GCCAGGACCG
    ANAAACCANG NGNGTGGCNN TAGNNNAGGA TNANGANGGG GNNANCCGAG
    GNNGAGAGGC NNNNNCNNAN CANNATATNN NGNNCCNAGT NGGNNAGGNG
    GTNNACCNAN ANANNAGGCN ANNCNGTNAN NNGCNANNCN NGGNTGGNCC
    CNTCCGTTCN GNNGCNNAAA NAAGGAGAGG AGNGGNGAAA CANNGNAACA
    TCACNNCCTA NNCNACCAGA AAGAANGANN NAANCNNAAC CNNCNNAACA
    AAANAGCGCA CCGANAANCC NGCATNNTNN NNCNNNNNCA CCNANGAGGA
    NCNNANTCGG CNNNNNNGTN ANTNCAANGC NCANANNNNG TGNAACNGCA
    ANGANAAGAC CCNCGNGNCN NNCAANGAAN ACAACGGAGG ACCCCATCCN
    ANANNANAAN AACCNNNANN ACACACANNC NNACACCCTN CCGCNCATCC
    GTNAANNNCC GCNAGANNNN TNNANNNNGN CCGGAGAGNC NCCNCGNNTA
    NCATAACCCC GCCTNNGNCC NCNCGANTGA TNCAANNCCT

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR