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16-0866-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 200700 [Map]; Strand: c
      • AT4G00440.3 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 2121; Region: intergenic
      • AT4G00450.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -1716; Region: intergenic
    Flanking Genome Sequence: 16-0866-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAGCCA 
    GGAAGAGCTT TAAAAATCCA AAAAGAATAA AAATCTGAAA AATCCCAAAA 
    AAGGAAATAA AAATGGATTC ACAAGACGAA ACCCTTGTTG CATAGCATAG 
    CATAGCATCC ACCATCATGT CAAAAATAGT CTAATAAATA AAATACTATT 
    TTACCCATTT AGCCCCTAGG AGCTTAGGCA AGAGAACGCA AGGACAGAAT 
    CGGAAATATA AACCAGAAAA GGTTAAGATT TTCTTACCAG AACAGTGTGT 
    GTTAGATCGA AATTCGATCG ATCAATCGCA AAAAAAAGAG AGTTTGTTGT 
    TGTTGTTGCT TCTCTGCTTC TATTCGATTC TTCTTCTTCT ATTTGGTCTT 
    TGTTTGGTGT TTGTTCTCTT CCTTCTTCTT CTTTCCTCAG AGCACACGAT 
    AACTATTTTC ACATCCCAAA CTACGGAATC ACAAAAATCT GCAGATAAAG 
    GAATTGTTTT TACACAGCAG AGAGAGAGAG CATTCGTTGT CCTCATTACA 
    CCAAAAAAGT GCACANGAGA AGAGATTGAA AAAGAAAAGA GTCAAACTTT 
    AACAAAGCCC AAGACTCTTN TTTGCTTCTT CTTCTTCTGG GCCTTGNTAT 
    TTATTGCTTC TTCTTCCTCT NTGAATCTCT NTCGCNCTCT ANATTNCCCN 
    TTTTTTGGAA AACCCTNNAT TTTATNAAGT NCCAANCTNN NNCCNGGCCG 
    NNNACCNCCN NGNCN

AT4G00440.3

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1283 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 77; Metazoa - 265; Fungi - 74; Plants - 239; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00450.1

Model type
Protein coding
Short Description
RNA polymerase II transcription mediators
Curator Summary
Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.
Computational Description
CENTER CITY (CCT); FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: photoperiodism, flowering, regulation of development, heterochronic, regulation of radial pattern formation; LOCATED IN: mediator complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med12 (InterPro:IPR019035); Has 216 Blast hits to 184 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 65; Plants - 86; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR