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16-0812-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 109468 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -665; Region: promoter
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -857; Region: promoter
    Flanking Genome Sequence: 16-0812-1 - 5-prime edge 
    ATTCCAGTTT TTAAGTAGGA TTATTATTGG TTGGTAAAAG ATGCAAAGAA 
    TATGAGAAAA GGTCTAATTG CGTGCTCCAT AAACCCTTAT TCTAGTTCAA 
    CCATAATTGT CAGTCAATAG AAGCAAGATA ATTTGAACGT CCAAGTCATC 
    ATCATCTTTT TTTTTCTTTC TGAAATTTCG TTTTACAATA AACAAAGAAA 
    GGTTCCGAGT CCTCAAGCAT CTCTCACGTC GGAGCAAGTT GCCATGCACT 
    CTCCAAAATA AAATAAAAAA CAGACAAAGA CTTTANACTT GNGACTTTTC 
    NACCTCATTA TGTACTTACT TACTTCATCT TCTATTNGGC ACCCACAAAC 
    AGTAGTTTCC ACTTTCTTCC TCAATAAGTT CCATTTTTGG ATTCTTTCCT 
    ATTTTTACAC AAATTTGTTG TATTCTAAAA AGTTATATAT TCTATTTGCT 
    GGGCTTTAAA TATGGGCTGG CTCTGGATAT GTGTGTAANG GATACATATT 
    AGTAAATAGT TAAGTCCAAA AAAGAAATTA TAAACCCCCT ATGTAGTTNG 
    AAAACTGGAT CATGTGACAA AACGAGCAGG GAAGGCCCNT AATAAGGCCT 
    AATAAGTAAG GTAAGCCCAC AGAAAAATAT ACTTACGGGC TTGGATTTCC 
    NAACCTTCCT AAAAAGNGGG ACCTACCCGG CTGAAAAAAA NAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 109593 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -790; Region: promoter
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -982; Region: promoter
    Flanking Genome Sequence: 16-0812-1 - 3-prime edge 
    ACTGGAATCC AGATATGTGT AGAAAAAAGG TAGACTACTA TAATTGTGTA 
    TGGGTGGAAA TGGATATACG CTACTGAGTA GGGGTTAGTT GGTCCACTTT 
    GGTGGTGGGC ATTAAAAATT GGAAACCTCT TTTTTCCTCA CAATTACACA 
    TTTTATGTGT GATTTTTTTT TTTGNNAANN ANGNGNNATT NATTNNCCTN 
    CCCTTTTGCC CTCATNAACC CCCCAATTTN ANTTNGATNG GGCAAAANNA 
    TGTNTTTTTT AANAAAAAAA NNNCANANCG GCTTNANTTT TAAAGGTTTN 
    GGNTTTAAAN GGTANCCNNT TAACNCTTTA AAACANTNNA AANAGTTTGN 
    CTTTTNCCAA TCNNAAAATN GTTCCCAAAN NCNNTNTAAA AAGTTTNNTT 
    CTCANNTTTT TNGANNAGTT TTTTTNNNCA GCTNTTTTTA NCAGTTTTGC 
    CCTNTNCCAA TAAAATTAAT ANCTAAAAAN CTNCCCNAGC TTTTATTTNC 
    CAANNAAACC CTTCAATTNT NTNAATTACT AGGGAANNAA AAANNCANTT 
    AAANGGGTAA AAGNNNAAAA ANAAAAAANA AAAGGGCCNT TNAAAAAAAN 
    NAANAAGGGN NNNNNNNCAT TANACNTNTN NAATGTTTNG ACACCNNCNC 
    GGGCNCNAAA AAANNNACCC AAAACCNTTN NNNNAAAACC AANTNNNTTT 
    TNTTAAATTN NAANGNNNNA ANNTTTTT

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR