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16-0641-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23116345 [Map]; Strand: w
      • AT3G62490.1 - [+] show detail - transposable element gene
        Distance: -1346; Region: intergenic
      • AT3G62499.1 - [+] show detail - YTH family protein
        Distance: -3499; Region: intergenic
    Flanking Genome Sequence: 16-0641-1 - 5-prime edge 
    CTGCCAACAC CATCTCCAAT GTCCACTTCA GTAATTTTTT TATCTTTTGG 
    AATCTTCTAA TGTCATTACT CTCTTTTCTT ATGACAACCT GTCTTCTTCT 
    GCTTTCTTTT CCTCAGCTTT TCTCCTGCAT AATGTTCAAT CTATTTTTCA 
    AATTAATCAT AATGTAACCT TTATCTCTCT CCCTTCTGTA CCTGGTAAAA 
    AAGCAGGATC GATTATGAAT AAACTACAAT TAAGTCTATT CCTTTGTTGA 
    ATAAGGCATA TCTCATATAC CTCACAAATT TAGGTACTTA TATATGGTTG 
    TAAAGACGTT TTAGCCCTAA TAATTCATTG TCGATTGTTT TTCTCTTTCT 
    CCTTCCAACA TCCAAGTTCT CTAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23116229 [Map]; Strand: w
      • AT3G62490.1 - [+] show detail - transposable element gene
        Distance: -1230; Region: intergenic
      • AT3G62499.1 - [+] show detail - YTH family protein
        Distance: -3615; Region: intergenic
    Flanking Genome Sequence: 16-0641-1 - 3-prime edge 
    GTTGGCAGAG AGATTTGTCC TCTCTTTTCT CTCTATATAA AATAAAATAT 
    CTCATATTTC TTCCGTTATA TATTCTCCTC GTATATAGTA TATATTCAAT 
    GACTGATGGG AATATAATCT AAAATATATT AACTCGAGTA CTAAAATTCT 
    CAGTTTCTAC GTCTTGTCTT GTTTAATACA AGGAAAAACT GATACGACTA 
    TAATCTAGTA TTGTACTATT TCATTTTTCC TTATAATAAA ATTTGAATTT 
    TTGGTTTGTC TAGTGTGACA TGACATCTCT GCGCGTGTAC GTTCCCGGCT 
    AAAACTTTGG GAAGTGTGTT TCTCTGTTGC AGTAAAGATT ACAGTGTATA 
    TCATTCTATA TTATTATAGT ATATAAATTA TAGTTCTCTT CTCAAACCAG 
    AAATTTACTC TTAAGTATAA ATAATTGTTG ATTCTGTAAT TAAACAATGA 
    ATTTGTACTA AGGGATTCAG ACAAATTCAC TCCTCTCTCA GCTAATAAAT 
    AATCAAAGGA GAAGAACAGA GTTGCATGAA TAGAAAGCTA GGGTTTGCTC 
    TATAATTGTA GTCTTTTTGT ATTAGGTCAA AGATGGATC

AT3G62490.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR

AT3G62499.1

Model type
Protein coding
Short Description
YTH family protein
Computational Description
YTH family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR