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16-0480-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3054685 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -1911; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 6290; Region: intergenic
    2. Chromosome: 4; Position: 3061128 [Map]; Strand: w
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-0480-1 - 5-prime edge
    GGTATCCCTA CATGGCGGGT GGGACCCACG GCGAACGGTT CATCAAGACT 
    TAAAAAAAGA ATAGATACGA TTGCATTGCA TATACTAACG GATGCGATCA
    TACCAGCACT AATGCACCGG ATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3056063 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -3289; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 4912; Region: intergenic
    2. Chromosome: 4; Position: 3056561 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -3787; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 4414; Region: intergenic
    3. Chromosome: 4; Position: 3057028 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -4254; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 3947; Region: intergenic
    4. Chromosome: 4; Position: 3058024 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -5250; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 2951; Region: intergenic
    5. Chromosome: 4; Position: 3058522 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -5748; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 2453; Region: intergenic
    6. Chromosome: 4; Position: 3059020 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6246; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1955; Region: intergenic
    7. Chromosome: 4; Position: 3059518 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -6744; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 1457; Region: intergenic
    8. Chromosome: 4; Position: 3060514 [Map]; Strand: w
      • AT4G06474.1 - [+] show detail - transposable element gene
        Distance: -7740; Region: intergenic
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 461; Region: intergenic
    9. Chromosome: 4; Position: 3061012 [Map]; Strand: w
      • AT4G06477.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-0480-1 - 3-prime edge
    GGGATACCCC ATCTAGTCTT AACGAGCTTT GATGCATGAA AAATATTCGA 
    AAACAATGCT TGAAAAAGTA ATTTTGGGTC CGTAATATAG CACAAATCAC
    GAAAATGCCC GAAAAAGTAC TTAAAGGTCA AAATTTGGAG TCGAGAAAAA
    GTCAATGGAA AAGTTCCATT GTCTTGCTTC TTTCGTCGGA GGGCTCTCTT
    TGGGCTTTCC GAAAAGGTAT CACATGCCAA GTTTGGCCTC ACGGTATAGA
    AGTTATAGAG TCATAAAGTT TTAACCAAAA AAAAAAAAAA AAAANGGGGG
    GGCCCCCCGG GGGCCNNCCG GGGGGGNCCC CCNNNTTNNT TTTTTTTTNC
    CCNANCCCCC NTNAANGGGG GGTTTTTNGG GGNAAANNNA CCNGGGNNNG
    NNANCCCCCC NNNCCNTTTA

AT4G06474.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retroelement pol polyprotein
Link
InterPro Scan - TAIR

AT4G06477.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.1e-112 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR