1. Home
  2. Mutant Lines
  3. 16-0178-1

16-0178-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 58295 [Map]; Strand: w
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0178-1 - 5-prime edge 
    GTTGGAGGTA AAGTTGGCGA ACTGAAGAAC GGGAGAGATC TCTGAGAAGG 
    ATTTGTAAGC AGCGATCTTG AAGATGAGGG AATAAGGGTT TAGGGTTTGG 
    GAGACGTTGT GAAGGAGATT ATTGAGAGCT TCTTTGAAGT AAAAAGCTGC 
    TCTTTCTAAT GGCTTCCCGA CGGGAGAAGA GAGCTGTTGA TTGAGCCGCG 
    CCAATATCCC CTGAGCTAGA CACGTGTCGC TCTCTATGAC CTCTGCTGCC 
    TTAACCAGCT GCTCTGTTAT CCCCACGGGA CCAGGGTTGA GCCGCTTTGC 
    CGGCGGAGGT GTATGGTGGT GGTGGCCGTA GAAGATAGCC GCAGGATTCT 
    GTGTGTAGTG GGTTTGACTT TGGTTGATCA GAAGACCGGA AACATGTGAC 
    GGCGGAACAG AGTGGTGGTC TAAACCGAAG CCGGTGTCGA CGACTCCGAA 
    ACCGGGTGAT GAGTAGTCAG AGTCGTGGAA GGTGGGAGAT GTTTGGAGAA 
    TGCTGTTGAG TTCAAGAGAG GGATCTGTGG AATCTCCCAT GATGAGTCCG 
    AGAATGCTCT GTTCGTGGTC ATGAGGAACT TGCTCCTCCC AATCACCCAA 
    CCCAATGGCT CCGCATTGCT CATCGGTGGT GGCGTCGCCG CCGCCTNCGA 
    CGGCGCTGTT TCCGCCGTGA GAGGAANACA CCGTGGAGGA AGAGGTTGGG 
    CTTAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 58179 [Map]; Strand: w
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0178-1 - 3-prime edge 
    CCTCCAACCA AGCCCTCTTA GAGTCCTTCC ATGGCTTCCA CCGTCTCCAC 
    ATCATCGACT TCGATATCGG CTACGGTGGC CAATGGGCTT CCCTCATGCA 
    AGAGCTTGTT CTCCGCGACA ACGCCGCTCC TCTCTCCCTC AAGATCACCA 
    GTTTTCGCTT CTCCGGCGAA CCACGACCAG CTCGAACTTG GCTTCACTCA 
    AGACAACCTC AAGCACTTCG CCTCTGAGAT CAACATCTCC CTTGACATCC 
    AAGTTTTGAG CTTAGACCTC CTCGGCTCCA TCTCGTGGCC TAACTCGTCG 
    GAGAAAGAAG CTTAAAATCA AACTATTGAG AAACAAAAAT CAAAATCAAC 
    CGTACAAGTG TAAGCTTTTA GAACCAAGAA GAAGGTTGGT TAGTGTTTTG 
    GAATCGAATA TGACTTGATG TCATGTGTAT GATTGAGTAT AAGAACTTAA 
    ACCGCAACCC GATCTTAAAA GCCTAGGTAG TGTTTCCTTG TTAGAAGACA 
    CAAAGCCAAA TACTTATATG GACTTTGGCT ACACCATGAA AGCTTAAGTA 
    GTGTTTCCTT GTTAAAAGAT ACAAAGCCAA AGACTCATAC AGACTTTGGC 
    TACACCATGA AAGCT

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR