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16-0168-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23117931 [Map]; Strand: w
      • AT3G62490.1 - [+] show detail - transposable element gene
        Distance: -2932; Region: intergenic
      • AT3G62499.1 - [+] show detail - YTH family protein
        Distance: -1913; Region: intergenic
    Flanking Genome Sequence: 16-0168-1 - 5-prime edge 
    GGCTGANCAT ATCANNCNGC TACNAGGCTT GACTATTCAA CANGGGTATT 
    TTGGTTATTA TGAAAATNGG CCTTATNATT TATCANGAAA AATTAAACCG 
    GNCGCCTGGA CGACAGCAAT TCTCGCAGGA GAATCTCTGT GTTTTTAATT 
    TGGAGCAGTG AACATTGTTC TTGGAATT

AT3G62490.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR

AT3G62499.1

Model type
Protein coding
Short Description
YTH family protein
Computational Description
YTH family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR