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16-0141-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 291144 [Map]; Strand: w
      • AT2G01660.1 - [+] show detail - plasmodesmata-located protein 6
        Distance: 0; Region: intron2 (CDS)
      • AT2G01660.2 - [+] show detail - plasmodesmata-located protein 6
        Distance: 0; Region: intron1 (3UTR)
    Flanking Genome Sequence: 16-0141-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGN GGTTANGANG TACCTCGGCT GAGCAGCGAN 
    GGATGCGNNA ACNGAGAGAN CTACCACCGA GGGNCGNAAC GNCCAGCCNT 
    GNAGCCAACT ATGATTGCAA GTGTTTTCTC TATCTCATCG TCATCATTGT 
    TATTACGATT CCCACCTAAT TACATCCCAA AAATAACACA TTTTTAACAA 
    TACAATTATC AAAAATATTA TATGCATAAA TTGTAAATTC TATGCAAAGA 
    AGATGGAGAA AATAAACGAA AAAAATAAAT CTTGAAAATA AAAATCTCAC 
    ATAACCACAT GACTAAGACA ATACGTTCGT AACTATTCGA TAATAAAATA 
    TATATAAATA GTAAATACTG TACAGTTAAG TTTTTACTGC AGTTATTGAT 
    TCAGTTACCA CTGTTAACGG CTGNTAATTT GAATATCTAA TTTTAACAAA 
    ATTTAATAAA ACGAAAGTTT TAAAAAGATA TAAAAATTAA TTTANATATT 
    TTTTGAGAAA ATTAAATAAT ANAGGTNTTA AACAGACAAA CTAAAATTAN 
    CCNGGNNATT TTTTNGGGGN TTTTNCCTTA NTNNAAAAAC NTNNNNAANN 
    NANNANANAN NNTTNTNNNN GNANNNNNNN NGNNNNNGNN GNNNNNAAGA 
    NNNNNNNNNA NNNNNNNGNN NNNNNGNNGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 656725 [Map]; Strand: c
      • AT2G02470.1 - [+] show detail - alfin-like 6
        Distance: 1810; Region: intergenic
      • AT2G02480.1 - [+] show detail - AAA-type ATPase family protein
        Distance: -4018; Region: intergenic
    Flanking Genome Sequence: 16-0141-1 - 3-prime edge 
    CTTCCTATAT CTAACAAAAC CGTTGCATGT GCTTTTATTA GGTATTTTGT 
    TATTTTGCAT GCAAACTATA AAAGCATTAT TTAAAGAAGT CAAGAACCCA 
    ACCTAAAAAA AAAANAATCC AACCTATAAG TAACCATAAN CTTTTCTTTA 
    ATGCAAGTTC AAAATAAACT CAAATAAGTN CNCAAACTTT TCATNGNCAA 
    CATCTTTCGT TNGGGGATTN CCATTAAAAG CAAAATCNCT GGATCGATCA 
    ANGTNGNAAC CTAATCATTC TNTTTTAANG CTTAANGCTT CAANCCAAAA 
    TCAAGTNGAT ANATNTANAA AAAGGTT

AT2G01660.1

Model type
Protein coding
Short Description
plasmodesmata-located protein 6
Curator Summary
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational Description
plasmodesmata-located protein 6 (PDLP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 7 (TAIR:AT5G37660.2); Has 1458 Blast hits to 1310 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01660.2

Model type
Protein coding
Short Description
plasmodesmata-located protein 6
Curator Summary
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational Description
plasmodesmata-located protein 6 (PDLP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 7 (TAIR:AT5G37660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02470.1

Model type
Protein coding
Short Description
alfin-like 6
Curator Summary
AL6 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
alfin-like 6 (AL6); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 7 (TAIR:AT1G14510.1); Has 1820 Blast hits to 1777 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 798; Fungi - 350; Plants - 563; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02480.1

Model type
Protein coding
Short Description
AAA-type ATPase family protein
Curator Summary
STICHEL mutant shows trichomes with fewer than normal branches.
Computational Description
STICHEL (STI); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, ATP binding; INVOLVED IN: trichome differentiation, trichome branching; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G14460.1); Has 15360 Blast hits to 15082 proteins in 2818 species: Archae - 391; Bacteria - 8894; Metazoa - 533; Fungi - 525; Plants - 301; Viruses - 38; Other Eukaryotes - 4678 (source: NCBI BLink).
Link
InterPro Scan - TAIR