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15-5471-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11096442 [Map]; Strand: c
      • AT4G20680.1 - [+] show detail - Domain of unknown function (DUF26)
        Distance: 135; Region: intergenic
      • AT4G20690.1 - [+] show detail - unknown protein; Has 86 Blast hits to 20 proteins in 1 species: Archae - 0; B...
        Distance: 800; Region: intergenic
    2. Chromosome: 3; Position: 7753259 [Map]; Strand: c
      • AT3G22000.1 - [+] show detail - Domain of unknown function (DUF26)
        Distance: 135; Region: intergenic
      • AT3G22010.1 - [+] show detail - Receptor-like protein kinase-related family protein
        Distance: -1052; Region: intergenic
    Flanking Genome Sequence: 15-5471-1 - 5-prime edge 
    TTCATAGCCA ACAACTGTAA TTAATAACCA AATAAAGAGT GAGGAAAAAC 
    ACAGCTTGGG ATCTTAGTCA TAGGCACATG TGATCTAAAC CAGCACAAAG 
    GGAAATCCAA GAATAAACAA TATAAATAAA AACTAGTAAA AAGCTCAAAA 
    AACCGGAACT GAAGTAAAAT AAGTAAGGTG TCAAGAGAAT GTGTTGTGCA 
    TCGTCATCAA ACAGTTTTTG AATCTGAAGT CCTTAGAAAA GGGTAAAGTT 
    CATACCTAAA ATCACAGCTC GTACCCAAAA TCCTCCCTCC TTGTTTACCG 
    TCGCAACACT CGGGAAACTC CTTTATAATG CTTTCCAAAC ACTCCTTACA 
    CATCTAAGGC TTAACTAGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17460416 [Map]; Strand: w
      • AT4G37050.1 - [+] show detail - PATATIN-like protein 4
        Distance: -646; Region: promoter
    Flanking Genome Sequence: 15-5471-1 - 3-prime edge 
    CTTGGAAGTA TGATTCTCGT TGTCCCTAAC GGAAATATTT TTATTGGACA 
    ACCTCATATA CTTTTCAGCA AAGTTCCCTA GTTCTGCGAT TTCAGTTCTA 
    TTAGTAGTTT AAGAAGCCGG GTTTAAACCT CCAACCAAAA ACATTGTACC 
    AAAAACCAAA AACATTGTAC CAAAAAAAGT TTACGCATCT TCAGGATGGT 
    AACCTAAAAA ACTCGGAAAA AAGCAATGAA AAGGAGCTAA AATATTACTC 
    TTCAAAAATT TCTGAGCACT GAGTTATAAA TAGATC

AT3G22000.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF26)
Computational Description
Domain of unknown function (DUF26); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF26) (TAIR:AT4G20680.1); Has 1355 Blast hits to 1322 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1355; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G22010.1

Model type
Protein coding
Short Description
Receptor-like protein kinase-related family protein
Computational Description
Receptor-like protein kinase-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF26) (TAIR:AT4G20680.1); Has 1318 Blast hits to 1299 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1318; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20680.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF26)
Computational Description
Domain of unknown function (DUF26); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF26) (TAIR:AT3G22000.1); Has 1375 Blast hits to 1344 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1375; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20690.1

Model type
Protein coding
Computational Description
unknown protein; Has 86 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37050.1

Model type
Protein coding
Short Description
PATATIN-like protein 4
Curator Summary
Patatin-related phospholipase A. Expressed in the floral gynaecium and is induced by abscisic acid (ABA) or phosphate deficiency in roots.
Computational Description
PATATIN-like protein 4 (PLP4); CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (TAIR:AT4G37070.2); Has 2044 Blast hits to 2033 proteins in 371 species: Archae - 0; Bacteria - 489; Metazoa - 210; Fungi - 168; Plants - 876; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).
Link
InterPro Scan - TAIR