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15-5443-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24789249 [Map]; Strand: c
      • AT5G61680.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -1234; Region: intergenic
      • AT5G61690.1 - [+] show detail - ABC2 homolog 15
        Distance: 246; Region: intergenic
    Flanking Genome Sequence: 15-5443-1 - 3-prime edge 
    ATATTTATGG TGTTCGTCTT AAGTGTGGTC GTTTTCGAAC GAGTTTTAAT 
    TTCCTTCGTC TATTTCTTAG GTTGTGAATA CATCATGCAT GCCAGCAACT 
    TAACCCTAAC TTATCTGAAA CACTATATAT ACAGTGTGCN TTACNTTTTA 
    TCACATTCAA CAAAGACAAA ACTCAATTTA AACTTTTTCT AAAACTTTAA 
    CCCCTGTACT ATATAGGAAC AACTCAATTT TTCACCAAAA ACAAACTCAA 
    CTTTGTTCAC GATTCTCATT TTCTAACAAC ACGAAAAATA AATCGTTAAA 
    TCATAAATCG ATCACGATAC CACGAACCCC TTGTCGTAGG CTTTTATGTC 
    CTAATGCATT TGGTGATGGT GGACGTGTCA CCGGAACATT CTGTGGTACC 
    CGCATCTCTG ATGAGTGTCC AGAGATGCAC ATCGACCCCG AGCCGTCTTG 
    TTGCCAGTAC ACTTCCACCA TTACTCCACT TGGAGACTCT GCGTTTTCTG 
    TATCAGGGAT C

AT5G61680.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G69940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61690.1

Model type
Protein coding
Short Description
ABC2 homolog 15
Curator Summary
member of ATH subfamily
Computational Description
ABC2 homolog 15 (ATH15); CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 11 (TAIR:AT5G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR