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15-4826-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 74491 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron2 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-4826-1 - 5-prime edge 
    CCCGGGATAG ATCTAAGTAG TTTGGCAATG GCTAGTTAAC TAGGGTTTCT 
    TTCGAAAACA TCATATCAAA GTAGTTTGGT TTGATTAGTG TTTTAAGTTT 
    TTTTTGCCAA TTAGTTTGCT TGATTTCATT TATTAGGAGG AAATGCGAAG 
    CGGAGGGCAG AATATAAACA TGAACATGAT GATGAGCCAT CACGCTTCAG 
    CTCACCACCC GAACGAGCAT TTGGTTATGG CGACTCGCAA CGGAAGATCA 
    GTGGATCATC TACAAGAGAT GCCTCGGCCA CCACCAGCCA ATAGACGTAA 
    CCTTCCATCT TCTACTCTTT ATTTCAACAT CTTCATATAT ATATATAANA 
    AAACAAAAAC CCTAATTCAC AAAACCTTAT CCATTCATTT CTTCAACCTT 
    TTATATATAC ACTCCAAANA ATCTCGTNTG TTTATAATGA ATTTATAAGT 
    TTTGATTTCA TTTTTGTNCC CTCGGTATGN GACTTCTCGC ATGCACTTTT 
    TTTTTGGTCA AAAAACATTT TCGACANCAA AGGGAAAATT AATANGTGAN 
    GTGTTTATCC CCCGGAAATN TAGCTAANCC TATAGATGCC AACTGATTTA 
    NTTTNGGGGG TANATCGNAA NAAAAATNNT GNNGANGGGA TGATGANNNC 
    NACCCAAGTG ANAGGGANAG GGANAAAAAA AAAGGNGNAA NATCNAAAAG 
    TGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 74607 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron2 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-4826-1 - 3-prime edge 
    ATCCCGGGAT GCTAACAAAA TTAAACATTT TTGGATTGAG TTTCACAATT 
    TTGCGTTTCT CGAGAAGAAA AGCCCTAATT ATTACTCTCT GTTTTTTTTA 
    TGAAAGAACC CTAATTTGTT TCGATGAATG AAACCGATGT ACCAAAAGAT 
    TTGGAGGAGG AGGAGGAGGA GGGGGAGGTA AAAAGGAATG GCCAAGGTTG 
    GAAACGGATG GAANAAGAAG AGCTCTCATG CTCACGGTCA CCGACAAAAG 
    GTTCGAACAG TGGCCGNATC TGACCGTCAC CGTCTTGAAC AAACTACTCG 
    GAGGAACACT CACCTACCAA TTAATATCAC ACATTAATTA ACTANTAATT 
    CATGTNAAAC CCTAGCTAGA GTTNTTAATT NGAAATATTG AGATGACATA 
    TANGATTTAT CCAAATATNC ANCTAAGGAC ATTNGNNACA TCAANCTTGC 
    ANTGGACGTA ACANANNTGG TCCNTAGATG ANAAGTGGGN NCGGTGGAAA 
    AGCTGGAGAT NANGAGNACC ANATTGGACT TGCTCATANT GGGANCCCTT 
    TTTNTTNATT TNAAAACANA GATTNNNTAA NTANATGATA NGAANGGCCT 
    TTGNTNTGNN TTGAAAAAAA ANTGACTNAN NNAATNGNTC AGANTNCNNA 
    NNNANTTACN NCTTCCANNN CACANTTTNA ANCNATAGNA NTCNAATGNN 
    TNGANNAAAA CCANCNNNTA TCNGNNGGGN TNGTTNTTNT TCANAN

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR