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15-4626-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3130096 [Map]; Strand: c
      • AT3G10120.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-4626-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC AGACTGTATA TGTGTTTAGA GATTTTTTTG TTTCTTGAGT 
    TTTGGAGATT TGTGGTTGCA TATTTATAGA ACTTAAGGTT ATGTGAATGC 
    CCCTGCATTT CGGGAATATT ACGAGAAATG CCATTATATC AAATGCTCCC 
    CTAAATGATC TTTATCTCAT TTTTTTTCAT TAAAAGTGTT TATACGTCGT 
    GGTGGGGTGT GGTCGGGTGG TGCTCTCCTA ATTATGTTTT TAAAAAATGG 
    ATCTCCTAAA CTAATTTCGA TTTTTTCACA TTAAAAAAAC GAGTTTCGAT 
    ATTTTCATTT TTGCAGATCT CGGAATAGTT GTGTANACTT GTAGTGGTAG 
    TGGTATAAAG GTGGTAGATG TGATTAGTGT GATCAGAATA TATCAAGTTA 
    AAAGATTTGA TAGTAAGTTA AAAGGAAATG GTAGGAAAAC TTATCTAATT 
    ACAAATAATT GAATTATATG TCTGAATATC CCCAAANAAT GGAAGTGTAT 
    GTCGTGCATC ACCGTTGCAT CCAATGTATG TTTATGACTT ATGAGTTATG 
    TCCTTTTTTA TCTAAAGAAT TTCTACCTAT ATTCTTGTAG GACTATATGA 
    TTATGTAGGG GGTNCAAGAT ATTCAAATNG ATTAGATTAA ANCTAAGTGT 
    TNACCNAACT NTCAACAATA CATTGTTAAC NACTNCCGAT GTTCTTNTGG 
    GAGGNAATAN CTNGCCNATG ANATTGANCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3108035 [Map]; Strand: w
      • AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-4626-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTGTTACCAT GACCATCACT TCTCCACCAA TCTCCCTTGC AAAAACTCCT 
    CCGAAGTAAC CACCGAAGAT TTTGTCTTTT CCGGTCTAAA AACTGCCGGA 
    AACTTCACGG AGACGGGGTT CGCCACCGTC CCAGTAGGCC CAGAAAACTT 
    CCCCGGCCTT AATACATTAG GCATCTCGTT TGTCCGGGCT GATCTCAAAC 
    CCGGATC

AT3G10080.1

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1595 Blast hits to 1591 proteins in 125 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 57; Plants - 1448; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10120.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03890.1); Has 57 Blast hits to 57 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR