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15-3890-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 77639 [Map]; Strand: c
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2255; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2794; Region: intergenic
    Flanking Genome Sequence: 15-3890-1 - 5-prime edge 
    CCTACGATGA ATATTTCATC CTATAGAACA TCATATGAAT TGATTACTTA 
    ATGAAGTTAA ATTTTTGAAA ACTCTATTAG GGACAATGTC CCACATCGGA 
    AGTTGAGTGG GATCTTAAGT GGTATATATA AGATATGGGC CTCTTTACCT 
    ATTGCCAATT AGTTTTAGGT TGGAAGCCCA CAGTCTGATA TGATATCAGA 
    GCTCGATCCG CNACNATTAC CTCAACCCGA TCCACATCGG TCCGGCTCAA 
    TACTTGGCCC GCCGATCCAT GCCCCAAACA TATCGAGATC AATGGCTAGN 
    AAGCGCCATC ATCTCGAGGG GGGCGTATTA GGGGACAAAT NTCCCACATC 
    GGGAAAGTTG AAATAAGGAT CCTTAAGGNG GGNNTTTATT AAAATATGGG 
    CCCTNTTCCN CCTATTGGCC CANTTGGGTT TTAAGGTGGG AAGCCCCCCC 
    CCTTANTNTG TGNGGTTTTT AAAAGCCCCC CATCNNGCCC TTANNNCNAC 
    CCCNGATCCC ATTNCGGGNC CNGGNCNAAT TCNTTGGGNN CNGCNGNTCC 
    NTNNCCCNNA ACNCTTTTTN GGAATNAANG NGACATGAAA NNNCCCTTNT 
    TNCTNGGGGG GGNNGNNNTN AGGGANNAAT TTNCCCNCNC TGGGGAGNNG 
    NGANAGGGAN TTTNANGGGG GGGTNNNTAA CAAAAANNGG GGCCCTTTNN 
    CCCNNNNNGN AAAAGGGNGA ANGGGGGGGN GNNCCCCCCC TNNNAANGGG 
    AANNACAAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 77755 [Map]; Strand: c
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2371; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2678; Region: intergenic
    Flanking Genome Sequence: 15-3890-1 - 3-prime edge 
    ATCGTAGGGA CTAATGGAAA AAAGTTCAAA TTCTTTTCGT TACAATTTAA 
    GTCGTCCTTT GCCACTAAAA ATATCCTATA TATACTCATA AAGTTTTGGA 
    AATTTGTTTC AATTCGTCTA GAAATTATTG TTTGTAGAAA AAAGAAGTAA 
    GGATATGAAA TGAAATAAGA TAAACTATGA ATGCAGAGAA AGACAGAACA 
    TTAAAATCGA GGACGACACA AGGCGTCGAA GTTGACTAAT TATAAAAAGT 
    AATTAATCGC GAAATCATGT AACGGAAATG AAAGCAAAAA AGTTGAACAA 
    AGGAGAAGCT

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR