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15-3752-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11723536 [Map]; Strand: w
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -1972; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -15741; Region: intergenic
    2. Chromosome: 4; Position: 3952396 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1794; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4786; Region: intergenic
    3. Chromosome: 4; Position: 3953463 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -2861; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 3719; Region: intergenic
    4. Chromosome: 4; Position: 3954531 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -3929; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 2651; Region: intergenic
    5. Chromosome: 2; Position: 3626494 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 34; Region: intergenic
      • AT2G09187.1 - [+] show detail - transposable element gene
        Distance: 13109; Region: intergenic
    Flanking Genome Sequence: 15-3752-1 - 5-prime edge 
    CTCACCTACC AATTAATATC ACACATTAAT TAACTAGTAA TTCATGTGAA 
    ACCCTAGCTA GAGTTATAAA TTTGAAATAT TGAGATGAGA TATAAGAATA 
    ATCCAAATAT ACAGCAAGGA CAGTGTCGCA GAAGCTTTCA TGGTGTAGCC 
    AAAGTTCATA TGAGTCTTTG GCTTTGTGTC TTCCAACAAG GAAACACTAC 
    TTAGGCTTAT AAGATCGGGT TGCGGTTTAA GTTCTTATAC TCAATCATAC 
    ACATGACAAC AAGTCATATT CGACTCCAAA ACACTAACCA AACTTCTTCT 
    TGCTTCTCAA AGCTTTTAAG AAAACATGTA ACGGTAAAAC CAAAGAGCAT 
    GTTGAGAATT GGAGAAAAGC TTCAGCATCC TCTTGTCGAA AACAGAGCAA 
    ACCGATAGAC TTGCCTCCGG TAGGATC

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G09187.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.3e-226 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR