1. Home
  2. Mutant Lines
  3. 15-3374-1

15-3374-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 271195 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 15-3374-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TTATTGGAGG AGAGTACTGT AGTGGATGTC 
    TCTGTCCGTG AACCAAAGAC GGAGAGTACT GTCGATGAAG TCTATGTCCG 
    TGACCTGGAG AGTATGAATT TGGGGCCAGA TGTTCATATG CATATACACT 
    TCTTCCTAAC CCACCATGTG GAAGTGGAAC CATATATTCC GGGGATCTTC 
    TTGAGCGATG AGGAAAAGAT GTTGACGGGC CGAGGTAACT ACTCACAAGA 
    GCTGATATTT CATCTTGGTC ATCGTCTCTT TGACTAGGAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 271196 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 15-3374-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TTCATGGACA ACAACAGTTA CCATATGGTA TACAAAGGGT TTACAGACAT 
    TCACCATCTG AAGAAAGATA TTTGGGTTTA TCCAATCAAA GGTCTCCTCG 
    CAGTAACTCA TCATTAGACC CCAAATAGGA GGAATGTAAA TTTGTAACAA 
    AGCT

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR