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15-3200-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18645 [Map]; Strand: c
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 15-3200-1 - 5-prime edge 
    CNTAATGGTN GAGTGAATNA TTACACGNTC GGATTGGTTA TGAATAGCAG 
    CAGCCTCTGC TTCTCTNGGT TGAAACTGAT GATTTCCCTC CGGCTTTCTT 
    CTCTTCTTCG TCCTCCATCT ATCGTTTTTC CTTAATTATT ATCATTTACT 
    TATAAAGCTA GAGACATCAA TAACTAGAAC AAGTTAATAT ATATGATGAC 
    TTGCCTGTGG GCGGCTGTGG CAGACGGAGT CATGATCGTC GATTGTGTTA 
    TCGTGCGAGC CCATTGATGT TGAGGTGAAA CCTACGTCGT AAGTGTCCAT 
    GGTCAGCCGC TGACTCCCGC CGCCGCTCCA CTCCGGTGCC ACTCTTGCTC 
    GTTTTCCACC GGCCATGGTA CGACCATCGC TACATGACCC CACCCGGGTG 
    GAGCCAACGC CACCAGGCTT GCTCTGCTGC TCGTGTACTA GGTTGGAGCA 
    AGGGACAAGC GCGTCCATTG CCATCGCGGC CCTGGAGGAG CGATGATGGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18884 [Map]; Strand: c
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 15-3200-1 - 3-prime edge 
    NTTTAAAACG GNNGAGGTAT TTTACCGACC GTTACCGACC GTTACCGACC 
    GTTTTACATA AACTAGTGTA CGTGGCTAAA TAAAAGTCAT ATGCGTACGT 
    ATAGTAAAAA AATAGATGCT AGCTAGGTAT ACATGAAAAT AGAGGGGATA 
    ATATGAAAAA GGGTGGTGGA CCAAAGTGAA GTGAATGCAT CTAAAGAAAT 
    GGACCTCATA CGATGATTCT ACTCCACACA CTTATGTTCA TCAATCTCTT 
    ATTTGCTTGT CCCCTAAAAA CTTATTTTAC ATCACTTTAT TACTTGGTCC 
    GGTTGGTCCA TTCATATACA CCTTTAATTA TTATATGCCT TGT

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR