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15-2874-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33511 [Map]; Strand: c
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -289; Region: promoter
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -580; Region: promoter
    Flanking Genome Sequence: 15-2874-1 - 3-prime edge 
    CGAGTAGTTA AGGCTACGAT TAAAGGAAAA GTGAANAATG TGGAGGAAAC 
    AACTAGTNAT GCCCTTGCCT TCATCGAGCA CTACGCTGCT GCTAGGTACC 
    GAGCCAGACG TCCTTAAGCT GAGCCTGTGT GTGTGTTTTG ATCATTTTGC 
    CTTAAATTTC TTCTTACTTC TTGATATTTG TGTGTGTAAT TGTTAACCAG 
    TCGTGTAAAT CCAAAAGTTC ATATATGACC GTAAATTGAT ATAATTCAAT 
    AACAAGGAAA GTTCTAAGCC TAAAACAAGC AAGAAAATAC CTTTGCCGTA 
    TACAAAGATT ATTAGCATTA TTATCGACAT CACAGAATGT AGCCCGTCTA 
    GCTCAGTTGG TAGAGCGCAA GGCTCTTAAC CTTGTGGTCG TGGGTTCGAG 
    CCCCACGGTG GGCGATAGTG TTTTTTCTGT TGTTTTTGTA AAGAGCTGAA 
    GTTATAAATG GGCCTTTGAA ATTAATGGGT TCGAACACCA ACGGTGGGCC 
    TTTTTTTCTT TCTATTTTTG NAAAGAGCTT GAATNTTAAA ATGGGCTTTG 
    AAATTAATGG GATCNGTGAG GNTAAGGGCC CATNTTTTAT AATAANNNTT 
    AGAAGTNGTT NCAAACCCGA CCCNNANCCG GNGTNCGTGG ATTNCGGGAA 
    ATNACTTNTT CTNTANATNA GCTAAACNTC NAAAAANACC CNGCTTTAAN 
    GTCTGCATTG CANCATTTTT CATGGTTNNN NA

AT4G00080.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
unfertilized embryo sac 11 (UNE11); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 574 Blast hits to 571 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR