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15-2351-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 75519 [Map]; Strand: w
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -135; Region: promoter
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -135; Region: promoter
    Flanking Genome Sequence: 15-2351-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA ATATATCAAA CCGGAACTAG TCTTTGTTTC 
    TATATAATCA GATAAAAACT CTACTTTGGG ACTAATTATC ATTATCAAGT 
    ACCATTGAAT TAGTAGCCGA TCGGTGAGGA ATAATAGATA TAAAGATTTC 
    AAAGTTTTAT AACGACAAGA TTTGTGCAGC ATCAAACATG TACATACGAC 
    AAACATGCTA ACTTTTTTTT TTTTTNNNAN CTTTTAAANC NGTTTNTTTT 
    TTGGGGGAAA AAANAAACCT TAANTNGGGC NAAAAAGGGG GGCCCGGNNC 
    CCTNNTTNAA AAAANAANCC NTNTTTNNGG GGNTAAATNG GGNGTTTTTT 
    GGANGGGGNA CCTNCCAAAA NTTAAAAAAA TTTAATTCCN CNNNTNAANG 
    GGGNAATNGN AAGGGGTTTN TNTTTGGGGT NNCCTTTTNN CNCNGGGGGT 
    GGGANCCTNG GNTCCCCNNA NGGTGNNANN NCCACNGGGG AAAAAATTTG 
    NGGNNTNNNG GNAAAGGCNN TNNNNAAAAA ATNTTTGGGA NTNGNANGGG 
    GGTCNTCTTT TTGGGGAAGN NANTTTGGGA CCNGGGGGNG GGGANTTGGG 
    GNGGGCGCCC CNNNGGGGTT TTANNNANCC NGNAAAATTT TTTNTNTNNC 
    GNNGGGGNAA NTNNNAGGGG GGGNNNTTAG NNAANATNNT CTTTTGCGNG 
    GGGANAAANA AAAAGAAAAT NAAGAAAAAA GNGGGGGGGG GGG

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR