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15-1398-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 71850 [Map]; Strand: w
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-1398-1 - 3-prime edge 
    GGTGAGAAGT TGAGTTGAAG AAACAAAGTT CGTGTTCGAT GCAATTGACC 
    AACAAGACAA CTACTCAATG TGTCGCTTTT AAGGTCTTTT ACATTCTCTT 
    CTTACAATTC TGTCTTATTA GTACACATTG AGAGAGTGTT GATGTTAATT 
    GAGAGACACA CAGGTTAAAA CAACCAATCC TCGCAAATAC TGTGTTCGTC 
    CTAACACTGG TGTTGTCTTG CCCGGTGATT CCTGCAATGT TACAGGTTCT 
    TAAAACCATT TCTTCTTTCA TTCAAAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 71966 [Map]; Strand: w
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 15-1398-1 - 5-prime edge 
    TTCTCACCAC CAACAACAAC ACAAATTATA ACAGAGGTTA CCCAAACAAA 
    CAACGACGGT TCAATTCGGA GAATCGAAAA CGTAAAAAAG GTGAAATGAA 
    TCCGAGAGGG ATCAAATCAA TCGGAAAAAA AAANCTTACN GGGGAATTTA 
    ANCTCANTNG GANGGATNTT AACNANATCT CCGGNCGTNN TGCTTNTTTG 
    TAAATCCTTC NAAATNGAAA TTGGATTTTT CTGTTTTTTT TTAGGGTTNN 
    CAACNGNGAA AAAAAAAANG AAANTCNANC AANTTTTGNT TTNGGTCANA 
    AAAAAAAAAA AGNGANTAAN TTTTTTTTTG ACCCAAAACN GGNAAATTTT 
    TGNNNTTTNA AATTTTAAAN GCCCCGTACN TAANTTNGNC AATCNCCGNT 
    NGNCCGGNAT TTTTTNAANG CNTTANNGGT ANCCCCANNA AANTNAAGGN 
    TTTNGTNCCN TGNCNGAAAN ANCCCCNNCA AAANGGNTNA CCANCCCGGN 
    CCGTNANCCA CCCGTGNNCC TTNTNT

AT4G00170.1

Model type
Protein coding
Short Description
Plant VAMP (vesicle-associated membrane protein) family protein
Computational Description
Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR