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15-1031-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1955453 [Map]; Strand: w
      • AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 15-1031-1 - 5-prime edge
    GATACTTCTT ATCTTACCGG TTTGAGGAAG AGTGTTGTGT ACGAAAACAA 
    AGAGAGCTAC CAGANNGNGG CNGCTGNCNN CTNTTGCNTA ACATATGGAT
    GAAATGTCCA ACAGTCATGT CTCGTGGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1955337 [Map]; Strand: w
      • AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 15-1031-1 - 3-prime edge
    GAAGTATCAT CATCCATGTA GAGTGAGACT TTACCTGCAG TTTTCCAAAG 
    CT

AT3G06420.1

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).
Link
InterPro Scan - TAIR