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Mutant Lines
15-0965-1

15-0965-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 8029889 [Map]; Strand: w
- AT1G22700.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G22700.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G22700.3 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (5UTR)

TACAAGACTC TCCTCACAGA ACGATTTAGA TTTAATCGGG AAAAAGTTCA 
GTCAGTGACA CTAATGTTCG AATCGAACAT GGTTCTCCAA ACACTATCTT 
CTTCTTCTCC TCCAATTCAC CGTCTCTATC TTCACCATTC TCAGATTCTC 
CCTTCTTCTG GGTCACCCAG CAAGATTTCT CTTCAGGTAA ACACTCCAAG 
TTCCTCTCTT TCGCTTCACC CATAGTTTAC AATCTCACTG TACTCTAGGG 
TTTCCTCTGT TTTTTCCCCA ATCAAGAATT TTGATTCGTA AATTGTTCTT 
ACGATAGAAG AAGATTATGT GGAATCTGAA CAAGAACAGA GTCAAAATTT 
ACCCTTTTAT TTTGTTCATG AACTTGCTAA TCTTCCTCCT TGTTTTTGAA 
CTTGTGGATG AAGGCAGATA CATGGAAGGA CTTTGGCCAT TCGATCTTTT 
CATGGTACTT CACTTCTTCT TCCCTGCTTA AAGTTTCATA CTTTACTATA 
CATCGAGATG TTTCTGCTTG AGGTTTAGAT TGATAGCTTT AGATTATGTC 
TTTGCAGAAA TTTCTGCTAG AGGTTTACCG GCTTTGAACA AAGCT

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 8030011 [Map]; Strand: w
  - AT1G22700.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: -49; Region: promoter
  - AT1G22700.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: -40; Region: promoter
  - AT1G22700.3 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: -40; Region: promoter
Flanking Genome Sequence: 15-0965-1 - 5-prime edge
```
TATGTGTGTG TGTGCTCAAG AGATAAAAGA ATAAAATCTA GCAGGAAGAA 
GAAGAAGAAG AAGATAAGGC CCACGTTGCC TCTTCCAATT TCCGGTTTAG 
TACCTTCCGG TTTAAATCTA CATATTATTT CATTTTGGTT TTATCTAATG 
GATCTTTTTT ATTTAATTAG GGAAGATTTA TGAATTTTTC AGAAATATAG 
GAAGAACCTT AACAAATAAT TAAGAAACTC TTCCAAACTT CTTTTGATAC 
ATGTTATTAG TTATGTTATA TACATCTAAA AACTAAAACT TAAAAGAGTG 
TGCTTTCTGA AAATTTCCCA AAACTTATCA TACTTAGGGG AAAAGGCTTG 
TCATACTTTG ACCAATAAGC T
```

AT1G22700.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary: Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 4976 Blast hits to 3489 proteins in 588 species: Archae - 121; Bacteria - 1806; Metazoa - 382; Fungi - 139; Plants - 249; Viruses - 0; Other Eukaryotes - 2279 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G22700.2

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary: Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 4973 Blast hits to 3484 proteins in 586 species: Archae - 121; Bacteria - 1802; Metazoa - 381; Fungi - 139; Plants - 249; Viruses - 0; Other Eukaryotes - 2281 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G22700.3

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary: Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 4968 Blast hits to 3486 proteins in 584 species: Archae - 119; Bacteria - 1806; Metazoa - 382; Fungi - 135; Plants - 249; Viruses - 0; Other Eukaryotes - 2277 (source: NCBI BLink).
Link: InterPro Scan - TAIR