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15-0880-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27297947 [Map]; Strand: w
      • AT1G72500.1 - [+] show detail - LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DUR...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-0880-1 - 5-prime edge 
    AAAGTGAGAC AAAGAACAAA CATGTGGGAT CTTGAAAGTA TAGATATGAG 
    ACTTAAAGAA ACGTGAATCT TTGTCTTTAT GAACGTTATC AAAGTCAGAT 
    GTTTCATCCT CTGTAACTAG TTTGGTCTGG TAAGATTTCT CATTGCTCAA 
    AACATCAATC TCAGCACCTA GAAATGAGCC CTGTTACACA ATGTCTTCCA 
    ATTATTTCCC AAAACAATAT CTGAAACAAT GCTATTAATG GAAAGATAGA 
    GAAAAGATGG AAAAAGAAGG TTTTTTGTCG TTTTGTTGTA ATGAAATTAC 
    CTTCTCACCC ATAGGAACAC CGACACAGCA GTCAAAGCGT TTGCTAGGCC 
    TAACACAGTG AACTCTCCAC CGTCCGGTGA CGGTGACAAA CGCCGTGTCG 
    AGCCAACAAT CTATATTCAT CTCAATTCCG AGCATCTGAA GCGGCACGAG 
    AGCTGAAGGA TCGCATCGTG CGTGAACGTA CGGCTGGTAG CTAGGAACGT 
    CGGGGTTATC AACAGCCACC GGATCTGTTA TTGAAGCGTA AGCCGTAATC 
    GCCGTCGGAA GAAAGTTTTC CNGTGAAGAA GGAGGATCTG GTACTACAGG 
    AGGAGCGATG CCTTTGCCGT AGTATATACC GTCTTGCGAG CTGAAGACCT 
    TGCTCTACTC GAAGTGCGAA CTCTTTCTGA CATTCTTTTT GGTTTTCCTA 
    NAGNGAGATT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27297831 [Map]; Strand: w
      • AT1G72500.1 - [+] show detail - LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DUR...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 15-0880-1 - 3-prime edge 
    CTCACTTTTT ATAGTTAGTT TTCTTTGAAT TTTGTTATGA ATAAATGCTA 
    AAATGTTGTT AATAATTATA GGTTGCTGGA GGATCAATCT TTTCGGTTAA 
    TGTGACTTGG TCTCAGAAAT TGATTTACAA AGACGGCAAG TTTCATCTCA 
    ATGTGCCTTT TAGATTCCCT TCTTATGTGA ATCCTATAGG CAAGGAAATT 
    ATTAAACGAG AAAAGATTGT GTTAAACATG AATT

AT1G72500.1

Model type
Protein coding
Computational Description
LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: inter-alpha-trypsin inhibitor heavy chain-related (TAIR:AT1G19110.1); Has 1407 Blast hits to 1406 proteins in 307 species: Archae - 6; Bacteria - 522; Metazoa - 484; Fungi - 59; Plants - 110; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).
Link
InterPro Scan - TAIR