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15-0816-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23143408 [Map]; Strand: w
      • AT3G62570.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 15-0816-1 - 5-prime edge 
    GGTNAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATGGC TAGGATTAAT GGAGGACGCA TTGGTTCTTC 
    TTCAAACCGG AAAACGTCTC GCAACAGTCG AGTTCCGCCG TCTAAGTGTA 
    AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23120490 [Map]; Strand: c
      • AT3G62500.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: SET domain protein 14 (TAIR:AT3G6...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0816-1 - 3-prime edge 
    ATTTTGACGA CATTCGATAA TCTGAATCTG AAGCGGTGCA AAATTGATTC 
    AGAAATTGAG TATGGTAGCC AAAAGGGTGA GATTATGGTG TATAAGAAGA 
    GACAACGAGC AAGCGTTGAT CAACCATGTA GCAGAGAACC CGGAGTTCTA 
    ACAAGTAGCT CAAGCTCCTT GACCAGTAGA GAAGAATCTC AACAAGTGTG 
    CTCTG

AT3G62500.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: SET domain protein 14 (TAIR:AT3G61740.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62570.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G47440.1); Has 338 Blast hits to 328 proteins in 106 species: Archae - 0; Bacteria - 6; Metazoa - 96; Fungi - 65; Plants - 144; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR