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15-0323-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22238246 [Map]; Strand: w
      • AT3G60170.1 - [+] show detail - transposable element gene
        Distance: 1715; Region: intergenic
      • AT3G60176.1 - [+] show detail - other RNA
        Distance: 1909; Region: intergenic
    Flanking Genome Sequence: 15-0323-1 - 5-prime edge 
    TGTGACCGAG CCAGCTGCTT CCGCATCTAT ACTGACTGAT CCGTATCTTT 
    TGAGAGTAAG GCTTGTTTTT TCTTGGTGCT ACGAGATTCT GTTCTTGACG 
    AGTGTTGCTA TCTCGAACTC AAAATGTTAG CTGTTGACAA GTTGTGAGCT 
    AGGAAAGCTG CTAGGAGACT TGTTGAAGAA CTCCAAGCTG TTGACGAGCT 
    GTTAGGCGGG CAATAGCTAG GACGGCTGCC GACGAGCTGT TAGCTGGGCG 
    AACTACGAGT CAGAGAAACT GCAGACGGAC TGAGCTAGGA AAAGTGCAGA 
    CTAGGTGCTA GCTAGACGAA CTGCGAGCTA GGAAAGCTAC AGACGATCAG 
    GGAGCTAAGA AAGCTGCAGA CGAGCTGTTA GCTAGGCGAA GTGCAGACGA 
    GCTGCTAGCT AGGAAAGCTA CAGACGAACT GGGAGCTAGA AAGGCTGCAG 
    ACGAGCTGTT AGCTAGGCGA AGTGCAGACG AGCTGTCAGC TAGGCGAAGT 
    GCAGACGAGC TGCTAGCTAG ACGAACTTCG AGCTAGGAAA GCTACAGACG 
    AACTGAGGTG GTTGGCTCGG GTACAAATTG CCTGAGTCAA AGCTGGGTTC 
    AGTATACTTC GTTCCGAGCT GATCGTCTCG GTACCAGGTT CTTCGGGATA 
    ACTGGATTTC TAAGCNCATA CCAAAGCAGA TAAGAAACTG TATTTAGCCG 
    AACCAAAGCT CG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22238130 [Map]; Strand: w
      • AT3G60170.1 - [+] show detail - transposable element gene
        Distance: 1599; Region: intergenic
      • AT3G60176.1 - [+] show detail - other RNA
        Distance: 2025; Region: intergenic
    Flanking Genome Sequence: 15-0323-1 - 3-prime edge 
    CGGTCACACC ATTCATGAAG CTCGTCGCAT TAACTCTTAA CCAACGAGCT 
    GGGGGGCTAA CTGTTGGGGT CGGATTCCCC CACAAGCAAG ACCGAGCCAA 
    ACAGTCTAAG AATAACAATC ACCTCATGGT TAAACATATG AATGGCCCCT 
    AGCCTAGAAC AAAGCACCTC GGGACCTTAT TCGATCGACC GTCCCGAAGA 
    GAGTTTGTAA AATGGCTCGG GTGTTAATCA TATGAACACA GCCCGAGCCA 
    ATCGTGAGAA CGCTGCGGGA AACATCTATA TCGGCTCGGG AGACAGCCAA 
    CTGAGCTTAA TGGAGTCATC AAGCGCGCCC CGAGCCGGTA CATACCGTTT 
    GCCCCGAAGC CACCTCTCAA ACGACCACCG AGCCGTGAAG AACACGCGAG 
    GCAAAGACTT GTAAAAACCA TTCATTCTCC AAGGATCATT TCCGGTAAAA 
    TGGGATCTTT TATGGGACTT TCGGAAATGA TAAAGGAGAA TCTTTGAAGA 
    TAATGTTGAA ATCAGGAAAT CTCCCCAAAA CCTCCGAAGA ATAAGGAGAA 
    TATCCTTAGG ACGATTATCC TCTAGAACCG ACCTAAGGAT AAATAAGAAT 
    CTTCCGAAAA ATATCGCTAG GGGGGCGGTT TAAGGATC

AT3G60170.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 7.6e-229 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT3G60176.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR