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13-6170-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18433317 [Map]; Strand: c
      • AT4G39730.1 - [+] show detail - Lipase/lipooxygenase, PLAT/LH2 family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-6170-1 - 3-prime edge 
    ACAATTACTT CGAGAGGGGT AATCTCGACA TTTTCAGTGG AAGAGCACCG 
    TGTTTACCTA GTCCGATCTG TGCCTTAAAC CTAACCTCCG ATGGCTCCGG 
    CGATCACCAT GGTTGGTACA GTTAATTACG TTGAGGTCAC GACGGCTGGT 
    GTTCACGCAC AGTGCTCGAC GCAGGATTTT GAGATTGAGC AATGGCTCGC 
    GACTGATACT TCTCCTTATG AGCTCACCGC CGTACGGAAC AATTGTCCGG 
    TCAAGCT

AT4G39730.1

Model type
Protein coding
Short Description
Lipase/lipooxygenase, PLAT/LH2 family protein
Computational Description
Lipase/lipooxygenase, PLAT/LH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: Lipase/lipooxygenase, PLAT/LH2 family protein (TAIR:AT2G22170.1); Has 247 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 3; Metazoa - 94; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR