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13-6052-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4013182 [Map]; Strand: w
      • AT1G11900.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-6052-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT AAACAAATGT CTCTTAAAAT CTTGTGGACC 
    AGCCAAATCT AATGAGGAAG TGTTCTTCAA CTCATCTGAA AGCTGCAATG 
    CACTCTGAAA ATCTCCTGAC TTCTTCAGAC AATCGATTAA AGCTCGGTAG 
    ACATAAACCG ATGGTCGAAT CTGTCTCTGC TTCATCTCAT CGAAAAGCCT 
    CAACGATTCC TTAACGTTCC CAGATCGACC CAAACTGTCT ATCACCGCTG 
    TATAACTTAG CAAATCTGGT TCAATTCCAC ATTGAACCAT TTCATTGTAT 
    ATCACCAAAC ACATATCGAA TCTACAAGCT

AT1G11900.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 30383 Blast hits to 10536 proteins in 259 species: Archae - 3; Bacteria - 11; Metazoa - 189; Fungi - 334; Plants - 28802; Viruses - 0; Other Eukaryotes - 1044 (source: NCBI BLink).
Link
InterPro Scan - TAIR