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13-5738-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1460522 [Map]; Strand: c
      • AT1G05080.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 0; Region: exon3 (CDS)
      • AT1G05085.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -466; Region: promoter
    Flanking Genome Sequence: 13-5738-1 - 5-prime edge 
    CTTCTGTAGA CTTTTCATTT GAACAAAAGG TGAGATGTTG TTGAAACCCT 
    AGGAAGGTCT TTTATTTCCT CGATGATCAA CTCTGGATCT TCAAGATTTA 
    ACCTCAGGGA GATTGTTGCG GTTTTTAAAC GCNTTAGAGT TGGCCAAAAC 
    GTATGTCAAG AATT

AT1G05080.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT5G44850.1); Has 1798 Blast hits to 1750 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1794; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05085.1

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR