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13-5732-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11125086 [Map]; Strand: w
      • AT4G20730.1 - [+] show detail - transposable element gene
        Distance: -4491; Region: intergenic
      • AT4G20740.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: -1065; Region: intergenic
    Flanking Genome Sequence: 13-5732-1 - 5-prime edge 
    GGGAAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCTCCA CTAGCATATT CTGAATCTTT AGTTCTTCAG 
    TTGCTCCATT GCATAGTTCT CCGTAATCAT ACTGTGTTAA TGGTCTCGTA 
    TTATTCTTAG ATGCATCAAA CTGAACAGAG CTTGAATGAG CTTCTTTGAA 
    GTAATCTTCA TTGCTTTAAA AAACATGACA AACTCCTTGC ACACATATTA 
    ATGAAATGGA TGGTTCTTTC AAACATTCAC TTATGTGTTT CTGCAAGTTA 
    GTAGACGGGA ATTACAAGAG CATGGTGCTT TGTGACAGAT TCTGACTATG 
    TGTTTTACAT GAAAATTGGA TGTCCTAACC TAGGAAAAGG AAGAGCAATT 
    TAGAGGCTAT ATTCATTCTG AACATTACAG CTCAAAATTA CACATTCGTT 
    ATGACGTTTG TTTGCTAAGT TTCTTATTCT TCTTCGTAAA TCTGAGTTTT 
    TGATGATAAC TTATATATCC ATTAATCAAT TACGAGTAAC AAATGCAGAG 
    AAGAAGCAGG TTCAATGAAA AAGGTCTTAC TATCTCCAAA AACAATATCT 
    ACACATATCA TCCTTCATAA AACGGGATTC AAATTATCAA TATGAAATTA 
    AAAACGTGGA GGAGCCATCA ATTAACTAAG TGACCTTAAG GAGACACACA 
    AAAAGACACN AAGCATAATG ATAAACATCA AGCAGNAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11125077 [Map]; Strand: w
      • AT4G20730.1 - [+] show detail - transposable element gene
        Distance: -4482; Region: intergenic
      • AT4G20740.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: -1074; Region: intergenic
    Flanking Genome Sequence: 13-5732-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCGAA 
    GTGTCCCTTT TCACCTCCAT ACGCCGGAAG CACTATTCAA AGTGAGAGAA 
    GGTATCACTT ATGGCATTCC CATATTTTAA TTTGCTCAAA GAAAAATTAA 
    ATATTTCTTA GAATCTCAGA CCATTTCCAA CGAAGAGTCT TTTGACCATT 
    TTCAACGGGA GATCTAAGTC TAAATATCCG AAAAGTAAAT CAAAGTTGCC 
    AAAAACCAAT AGACTCAGAT CCAAAATTGG AATTTTAGAC AATGGTTTGA 
    ATCTCATAAG TGTCACATCA TAAATGGTGA ATGTATTTGT ATTAGTAATG 
    TTTATGTGGG CATGCCCACC CCATTTACGC ATGTTCCATT TAAAACTCAT 
    CCCATTTAAA CCCATATAAT TTTAATTTTA AGGTCTATTA AGATTGCTCA 
    TTTAAACCTA TGTACTCATT TTGGAATCCC ATTAAATTGT ACATGAATAT 
    ATATTGTTTT CAATTATATT GACAATTTTA TATTAACAAT TTGTTAATTT 
    TTGAAACAAA AATAGTACAA AATTAATATT TTTGTTAATA ATTTCATAAG 
    CT

AT4G20730.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR

AT4G20740.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G06710.1); Has 37034 Blast hits to 11477 proteins in 267 species: Archae - 10; Bacteria - 18; Metazoa - 245; Fungi - 473; Plants - 35231; Viruses - 0; Other Eukaryotes - 1057 (source: NCBI BLink).
Link
InterPro Scan - TAIR