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13-5711-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3107133 [Map]; Strand: w
      • AT3G10070.1 - [+] show detail - TBP-associated factor 12
        Distance: -318; Region: promoter
    Flanking Genome Sequence: 13-5711-1 - 5-prime edge 
    CTTCCAAGTT AACTAGTGTC AAAGTCTCTG GTCTTTTTCT CACATACTCA 
    AGAGTACACA GCGATCAAAT TAGCTAGTGT CACGACAAAT TGGAGATTTG 
    TTTGCAGCCT TTAGAGCCTT ATAGCAAAGA AGAACTGGCA TTGATTTTGA 
    TATATTTTGT GGATTGGAGA AGATATTGTC AAATTTTCAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3107017 [Map]; Strand: w
      • AT3G10070.1 - [+] show detail - TBP-associated factor 12
        Distance: -202; Region: promoter
    Flanking Genome Sequence: 13-5711-1 - 3-prime edge 
    CTTGGAAGCT ACATTTCCAG CAATAGAAGA AACTTGCTAT CTGAGCATAA 
    TGAAACGCTG CGTTTTAACT CTCATTTATT CTTTGGGGTT AAACTCATCG 
    TTTTAATCAC ACAACAGAGA AAAGGAATTG TTAAAGCCGG TCCGGTATTA 
    ATAATTATCG AGCTTTGCAG TTTCGGTTCA CTTGTTTAAT ACCGTACCGA 
    CAATTTCGGT TTAATTAGAT TTCTATATAC TCAATCAATA TCTCTATTCC 
    CTCCACATTC ACAACCTTTT CATGGATCAG CCACGGCAAA GCTCGACGGC 
    GTCTCAGCCA CCGGAAACAC CTCCTCAGCC GTCGGATTCG AAACCATCGA 
    CTTTAACACA GATTCAACCA ACGCCTTCCA CAAATCCGAG TCCCTCCTCC 
    GTTGTTTCCT CTATTCCCTC TTCCCCAGCT CCACAATCAC CATCGCTCAA 
    TCCAAACCCT AATCCTCCTC AATACACGCG TCCGGTGACA TCTCCGGCGA 
    CGCAACAGCA GCAACATCTC TCCCAGCCTT TAGTACGGCC GCCTNCGCAG 
    GCGTANCTCT AGACCATGGC AACAACACTC CTCTTACACT CACTTCTCCT 
    CCGCTTCGTC GCCATTGTTA TCTTCCTCAT CAGCGCCAGC CTCTTCGTCT 
    TCGGTCTTTA CCTATTAGTG GGCAACAAAG A

AT3G10070.1

Model type
Protein coding
Short Description
TBP-associated factor 12
Curator Summary
Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.
Computational Description
TBP-associated factor 12 (TAF12); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: chloroplast, transcription factor TFIID complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Transcription initiation factor TFIID subunit A (TAIR:AT1G17440.2); Has 50598 Blast hits to 32470 proteins in 1374 species: Archae - 31; Bacteria - 3770; Metazoa - 21452; Fungi - 11498; Plants - 4385; Viruses - 864; Other Eukaryotes - 8598 (source: NCBI BLink).
Link
InterPro Scan - TAIR