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Mutant Lines
13-5425-1

13-5425-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 11133773 [Map]; Strand: w
- AT4G20770.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: -687; Region: promoter
- AT4G20780.1 - [+] show detail - calmodulin like 42
  Distance: 0; Region: exon1 (CDS)

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCGTC GCCGTTTTTG TCGAATAAGT CGAAGATTCG TTGGAGACGA 
AGTGCGTTTA GGCTTGGGCT ACGTAGTCTG AAGGATGATG ATTGTCTTGC 
AACTTTCTTC TTCTCGTTGT TGTTACTCTC CATTGTTATC TTGTGTTCTT 
CTTCTTCTTC TTGTTCGTTT GTGGAATTAT AATCTGAGAT TGAGAAATTG 
AGTGATGAGG GCTAATTATA GAAGAGAAAC AATTGGTGAA TTAAAAAATT 
TATGTGTAGG AGTCCGTTGT TGCCGGCATT GACTTTGTCT GGCCCGCCAT 
GTAAGAACTT CTAGCATCAG ACCCCATAAT TCATACTATT AATGTCAAAA 
TAAAAAGGTC ACCTTTTTTT TTGCCAAAAA AAAAAAAAAA AAAANGGGGN 
CCCCNTTTTN NGGNNNNGGN AAANNTTTTT TNGANNNGGN NTTTAAAAAA 
AAAACCCNTT TTTTTTTCCC CNGGGNNNGG GGGGGNNAAA AAAAAAANCC 
CCNNNTTTTN NAAAANNNTT TTTTTTTGGA AANNNNNNNN GNNNNNNNAG 
GGGGNGNAAA AAAAAAAANG NGNNGGNNGG GGGGNTTTTT TTTNTTTTTT 
NNNNNNNNGG NNNTTTNNAA A

3 prime edge [+] show sequence

Chromosome: 4; Position: 11133703 [Map]; Strand: w
- AT4G20770.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: -617; Region: promoter
- AT4G20780.1 - [+] show detail - calmodulin like 42
  Distance: 0; Region: exon1 (CDS)

TTCATAACCG TCGAAGAGCT AAGCCAAGCT CTAACACGTC TTGGTCTCAA 
CGCTGATCTC TCCGATCTCA AATCCACCGT TGAATCATAC ATCCAACCTG 
GTAACACTGG TCTCAATTTC GATGATTTCT CTTCTCTTCA CAAAACACTC 
GACGATTCTT TCTTCGGTGG AGCTTGTGGA GGAGGAGAAA ACGAAGATGA 
TCCTTCTTCC GCAGCTGAAA ATGAATCGGA TCTCGCCGAG GCGTTTAAGG 
TGTTTGATGA GAACGGTGAT GGATTCATCT CCGCTAGAGA ACTGCAAACT 
GTTCTGAAGA AACTTGGTTT ACCTGAAGGT GGAGAAATGG AGAGAGTGGA 
GAAGATGATC GTTTCCGTTG ACCGGAATCA AGATGGTCGC GTTGACTTTT 
TTGAATT

AT4G20770.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02330.1); Has 56027 Blast hits to 13813 proteins in 239 species: Archae - 0; Bacteria - 4; Metazoa - 154; Fungi - 170; Plants - 55018; Viruses - 0; Other Eukaryotes - 681 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G20780.1

Model type: Protein coding
Short Description: calmodulin like 42
Curator Summary: Calcium sensor involved in trichome branching.
Computational Description: calmodulin like 42 (CML42); FUNCTIONS IN: calcium ion binding; INVOLVED IN: trichome branching; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 43 (TAIR:AT5G44460.1); Has 15351 Blast hits to 11255 proteins in 1265 species: Archae - 0; Bacteria - 33; Metazoa - 5903; Fungi - 3155; Plants - 4145; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).
Link: InterPro Scan - TAIR