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13-4547-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3626138 [Map]; Strand: c
      • AT1G10880.1 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-4547-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTT GCTCTGACTG GCGGAAAGGA AACCAATGGT 
    TCGAAATCTC ACGTAGAGTC GCCGCCGAGA TCGTCTCTGA TCGCCGGTAC 
    TACGCCGTCT TTAAGGATCA CTGCCGACCG CCGTGTTATA TCGACGAGCA 
    TTATCTTCCG ACGTTAGTTA ACAAGATTTG TCCGGAGATG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3626143 [Map]; Strand: c
      • AT1G10880.1 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-4547-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAG 
    CGACACGTGT GGGAGCATTT TAGGGGTGTA ACGGCCTCGG CCCATGGGCC 
    TTGGGTCGTC GAATGAGCCG AGGAAAGAGC GAGTGGAGCG CGTGAGGTAA 
    GTGTAGATTG TGGTGAAGTT GAAGAGAGGG ATACAAGTCT CGGAGAGGAG 
    GACGAAGCGT GCGTTGGAAG GTTCTAGTAG GGCATGAGAT ATAAGACGCT 
    TCTCTGCATC CATCATCGAA CATTTTCCCC ATTCAACGGC CTACAATATT 
    TTACAAATGT CAAAGTATCG CAATGTTATC TTGTAAAATA CAATAATATG 
    TTAACCAACA AGGCAACAAA TTAAACCTAA TTAATGAATG TAAAATATAT 
    AATCATATAC CTTGCTTGGT ATCCGTTTCT TGTAAAATAC TGAAGATTCC 
    GGCGGCTCTT GAGTGAACTC CGGCGAGGTA TGAACGTAGA TGGAATAAAA 
    CCCTTCATGA CCTTTGAAGA ACATTTCCCA AAGAGGGGAC AACGGCAAAT 
    TCCACCTCGT TAGAAACATG AACGCAACCT TTGGATGGGT CTCATTCTTC 
    ATGGGGCTGC GTGGGGCCAT CGCTGCTCGC CACATCAGCT CTTCGTCTGC 
    CATATTACTA CCAGAGCTGC NAGGAGAAGG ANAAGGAGGA GGANAGAGGG 
    AAGGAAAAGT GANANGATTT GAGGAAANAG TGTGATAATC TTCGACNAGG 
    AANANTGATG TTTGGANGCC TTTGNTA

AT1G10880.1

Model type
Protein coding
Short Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator Summary
Putative role in response to salt stress. Mutants grow larger than the wild type under salt stress condition (Ann Stapleton and Ashley Green, 2009, personal communication).
Computational Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G16170.1); Has 696 Blast hits to 692 proteins in 56 species: Archae - 2; Bacteria - 7; Metazoa - 8; Fungi - 7; Plants - 576; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Link
InterPro Scan - TAIR