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13-4496-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107833 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4496-1 - 5-prime edge 
    GAAAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCCCTTT TCTACCTGAA GAGGACATGT GTGTACGATC 
    TGCACCACAG CATCCTCGGG CTGCTCTTCG CCGTCTTGAT AACTGGTGTC 
    ATCACTGACT CCATCAAGGT AGCCACCGGA CGCCCTCGTC CTAACTTCTA 
    CTGGCGCTGC TTCCCCGACG GCAAAGAGCT GTATGATGCG TTGGGAGGTG 
    TGGTATGCCA CGGCAAGGCA GCTGAGGTCA AGGAAGGCCA CAAGAGCTTC 
    CCGAGCGGAC ACACTTCCTG GTCCTTTGCG GGGCTTACAT TCCTTTCCCT 
    TTACCTCTCT GGCAAAATCA AGGCCTTCAA CAATGAAGGA CATGTGGCTA 
    AACTCTGCCT CGTGATCTTC CCTCTGCTTG CCGCTTGTCT TGTGGGGATA 
    TCTCGTGTGG ATGACTACTG GCACCACTGG CAAGATGTCT TCGCAGGAGC 
    TCTCATTGGC ACCCTTGTAG CCGCCTTCTG CTACCGTCAG TTCTACCCCA 
    ACCCTTACCA CGAAGAAGGA TGGGGTCCCT AGGCTACGCC TATTTCAAGG 
    CAGCTCAAGA ACGAGGANTC CCTGTGACCT CCTCCCAAAA CGGAGATGCC 
    TTGANGGGCT ATGTCTTTTG NAATNGGATA CAAAATCTCT NGAAAANATT 
    GGAATCTGNN ACTTNCANCN GCNCCNAANT GANACTCCCN CTCTATNAAT 
    ATGATNNNTA TTNGGTNTTT TNATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108839 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -36; Region: promoter
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -228; Region: promoter
    Flanking Genome Sequence: 13-4496-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAAG 
    GCCATATCAG ACCGGCGATA ACTGAAAAGT CAAAAGTCAA AATTCAAGAG 
    GAAGAGGAGT TTCTAATCAT GTCTCTCTCT GTTTTCTTCT TATTCTTCTA 
    TCAAACCGTC AAGTTGGGAA ACAAAACAAA ACTCGCAAGT TTAACAACGC 
    NGTCTTCTAC CTCCTCCTCA TCGGACTATT TATCTATAGT CTTCGTTAGA 
    TCAATTCCTC TGTTTTACTC CTAAGTTTCG AGATCCACAT TTCTTTTTAA 
    CCTCATCTCA TCTCTTAGTC GAGATCTTCA CTTTCTGATG ACAATAGGGT 
    CGTTTTTCTC TTCTCTCTTA TTCTGGCGCA ATTCTCAGGT AACCTCAATC 
    GACTATTCTC TGTTCTACTC CTTTTTTCTT TATCATTTTA AAAATCCTAA 
    CATTGAAAAT AAAGTAGTTA AATAGAGTCA ACGAAAACAT TGTTAATGAA 
    ACAGTGGTGT GCTTAGCATA ACGAATCAGA CAGACAAAAA GTGTCTGGAT 
    C

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR