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13-4112-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 55955 [Map]; Strand: c
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -7605; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 2750; Region: intergenic
    Flanking Genome Sequence: 13-4112-1 - 5-prime edge 
    GTCTCACATG GATGCAGTGG TGAAATAATC CACGCCCTAT TAGAAACTTA 
    ATTTTTCTAA TAGGGATAGC CGAGACCAGT TTTCTCGCAC TTAAGCTCTG 
    GTTCGGACAG AAATATAAGC CGAACCCTGT ATTTCGCGAT CTGCCGAACA 
    GATGCTCTAC GGGGAGTAAG CCGAGCCCAG CATCTCGCTC CCCAAATAAT 
    ATGCTGAGTC CGCCTCACTT ATTTTTTATA CAGAGCCCAG AACTCCCTCT 
    TTAAATTATA CATAGGCCTA CTGGGCATAA GCCGAGAGAC GTCTCGCGCC 
    CAGTACACGC CGAATACTTT TATTTACAAA GCCGAGCTCA GTCTCGCACT 
    TAACATCTAA CCCGAACTTA GAAAAAATCG GCTGTGACGT CAGGTGAAAA 
    CCAGTCCGCC CGAAAGCCGA GCTCAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11043397 [Map]; Strand: c
      • AT4G20510.1 - [+] show detail - transposable element gene
        Distance: 0; Region: intron1 (NonCoding)
    2. Chromosome: 4; Position: 11116854 [Map]; Strand: w
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: -2488; Region: intergenic
      • AT4G20730.1 - [+] show detail - transposable element gene
        Distance: 944; Region: intergenic
    3. Chromosome: 2; Position: 56071 [Map]; Strand: c
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -7721; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 2634; Region: intergenic
    Flanking Genome Sequence: 13-4112-1 - 3-prime edge 
    TGTGAGACGC GCATCGAACA CCTGGCCAGG GTGCCGAGAG TTGATTTATT 
    ACAGATCTTA AAGCGAATT

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT4G20510.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1)
Link
InterPro Scan - TAIR

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT4G20730.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR