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13-4003-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26433502 [Map]; Strand: c
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -404; Region: promoter
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: exon1 (CDS)
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: -562; Region: promoter
    Flanking Genome Sequence: 13-4003-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG CACGACTCTT TCCAGGTCTC GTGTGCGCGC 
    CGGTGCTAGC CAGCTCATGA ACGAACCGCT TAACGATCAA CGCTCCATCT 
    CTTCTCCCAC TGTCGTCGAG GTTGATCTTG GTGACCGGAG TTATCCGATC 
    TATATCGGCG CCGGCTTGCT TGATCACTCA GAACTTCTTC AAAGGTTTCA 
    TCTTTTGTCC CATAAGACCA TTTCATTTTA ATTTAGTTTA GCTTTTTGAG 
    CTTTAATTGT CGCCACCATC AAACGGTCGA GTTTTGACTT CTCTTTAAGC 
    GATAGTATCG ATTTAGTAAG GTGTTGATGT CGTTGGAGAT GACTAGTGAG 
    CTTATTTAGG CCAATGGTTT TTGTTTAAAA AAATTTCAGA GCACATACAA 
    TACTCAAGTT TTTTAGAGTT TGGTCTTGCA TAATTTGTTG ATAAATGTTT 
    AGGCATGTTC ACGGAAAGAG AGTGCTTGTG GTCACCAATG ATCGAGTTGC 
    TCCTCTCTAC CTGGACAAGA CTATAGATGC TTTAACCAGA GGAAATCCAA 
    ACGTGACAGT GGAAAGTGTA ATTTTGCCTG ATGGAGAGAA ATACAAGGAC 
    ATGGTACATG TTATCTTGGA TTTTGATTTC CCTGTTTATA ATAAAGAATC 
    ATTAGTAATC GTGAGTTATT GAGACTCTTT TATTCTTTCT AGGATACTCT 
    CATGAAAGTC TTCGACAAGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26433504 [Map]; Strand: c
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -406; Region: promoter
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: exon1 (CDS)
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: -560; Region: promoter
    Flanking Genome Sequence: 13-4003-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    AGGAAGATAA AGAAAGTTCC CCAGGTTTAG ACTTTGCAGA AGCCACAGGG 
    AAAAAAATAG TTGGTGGAGC AATAAAGGCA CGGCTTTGAA AGGAGTTGAG 
    ATTCTTGGAG GCGGCGACGT TGGAAAGAGA AATGGTGTTG GCCTGCCATG 
    GAAATCGATG CNGGATCAGA AGTCGGGTTT GGGGAGAAGA GAGAGTTGAA 
    GAAAAGAAAT TGGGTTGGTG AAGAAGAAGA AGACTGAATT GAAAAAATAC 
    ATTAGAGGAT TGATTTCGTG GTGTTGTTTG GTGAAGCCTT CGGAGACGGC 
    GTGGGGTAGG TGGTGGTCAC TCTCTCAGGC CATTGGTGTA ATCTCCTACA 
    ACTCACCCTA CGCTAAAACA GGTTATTTAT TTTACTCACG TGAGATAGGC 
    GGTCTANATA TTGACACGTC ACGTAAAGAC CTCACTACTT GTCTTCTCAT 
    GTNCACCTCN GATNAAAACN ATGCCGTTTG ATTGACCCNC NANNNTNTNN 
    NNCGATNAAA TANTCNTTTN NTGGANCNAG CCNNCNCTCC TCCTCNTTTN 
    NNNACNNNNN CNCNNNNNGC NACNACNCNC CNNNNNNGAN GATCCCNNNN 
    NNGNCCNNNN NCCCNCNTNC C

AT5G66120.1

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates; INVOLVED IN: aromatic amino acid family biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase (InterPro:IPR016303), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 8426 Blast hits to 8421 proteins in 2521 species: Archae - 162; Bacteria - 5225; Metazoa - 16; Fungi - 182; Plants - 46; Viruses - 2; Other Eukaryotes - 2793 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66120.2

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66130.1

Model type
Protein coding
Short Description
RADIATION SENSITIVE 17
Curator Summary
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.
Computational Description
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR