1. Home
  2. Mutant Lines
  3. 13-3922-1

13-3922-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19662811 [Map]; Strand: c
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -194; Region: promoter
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: -6; Region: promoter
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: -33; Region: promoter
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: -33; Region: promoter
    Flanking Genome Sequence: 13-3922-1 - 5-prime edge
    CTGCAGAGAG ACCAACTCAT TCTCTCCTCC AATAATCGCG ATAAGGAAGA 
    AGAAACTTGT TGGCTTTATT GAACCGGTCC AATTCTCAAC CGAACTCCGG
    TATTCCAAAT TAAAAGCCAG CAATCAATAA TTGAATCTCG AGCCCACGAC
    GGTTTGATTG GTTTAGCCAT TTCTCGGCGC TAAATATAAT TTATTAAAAT
    GATGATTATT GCGAGAAGAA AAGATCTTTC TTTGATTTTT GCTTGTGGAT
    TTGGATTTCC AGTTTCCAAT TCTCTCAAAT TTGCAATCCA CCTTCAAATT
    CACACACATC TTCAACAGCT ACCTTTTCGG GAACTTGCTA GAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19662927 [Map]; Strand: c
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -310; Region: promoter
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3922-1 - 3-prime edge
    CTCTGCAGCA CCCATGGGGT CTCCTCTTCC ATAGCTCTCA CTTATGGCTT 
    TCGCCATAGA AGAAGATCCA CCTTCCGTAT TTTCGCCACC TCTGACGGAT
    TAGAACCCAA GGACGACCCG CCGGAATCTC CTCTCCCTTC CTCATCCTCT
    GCTCTCGGTA AAGACTTGAA AAAGGTCCGC CTTTTTTCTA TATCATTTAC
    GATTTTTCTG TTGAAACCAT AGGAAGACAT GAAAATGAAA ATGCACCATG
    TTAGATTGGT CTCTAGTGCT TGAACCTGTT GAAAGAGTTG CTCAAGCT

AT2G48060.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.1

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.2

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.3

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link
InterPro Scan - TAIR