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Mutant Lines
13-3222-1

13-3222-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 2240000 [Map]; Strand: c
  - AT1G07280.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: intron2 (CDS)
  - AT1G07280.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: intron2 (CDS)
  - AT1G07280.3 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: intron2 (CDS)
Flanking Genome Sequence: 13-3222-1 - 5-prime edge
```
GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCGTA CTCCATAATC TAACTTAGTA TAATAAAAGA 
ACAAAATCAA AGATAACATG ATTAGTAGTA AATTATAATA TAATGGTCAG 
ATGTTAATTA CCTGTCGTAG TCATGAATGA TAAGGTAGAG AAACTTGTGC 
GTAATTAGCA AGAAGGAGAA CGTTTCCAGG CTCCTGAGAC AATCCCGTTT 
GGTAAAGAAG CTCTGTCTTG AAGTAATCCA TGGATTCTTC TGCTTCTAAT 
CGAGCTTCCA CCGGAGAAAC CATCCCCTTC ATCGTCTCGT GATCCAACGT 
TTCCATTTTC GCAGTTTCCT CCAATATCGA ATT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 785234 [Map]; Strand: c
- AT4G01820.1 - [+] show detail - P-glycoprotein 3
  Distance: 0; Region: exon1 (CDS)

CTTTAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTATAGGCT 
ATAGCTCCGA TCGAACCAAC GATCATCAAC AACACATCGG TAGAATCTGA 
GAAGGAAAAC AATTTGTAGA ACGGTACGGT CTTTGTCTTT TCTTCCATTT 
CTATCTTTTT TGTTTTCCTT TTTTCTAACT ACAAACATGA TTGATTCATT 
TCTTATGTCT CTTTCATTTG ATATTTTCTT AAAATGATTC TATTTAATGT 
TTAATGGCCC AATTGAAGTG ATCTATATTA TTTTAAGAAC AAAACTGATC 
ATTAGTTATA AAATATGAAA ATATCGTCAG TCTTGTGTCG TCGTGTATGC 
CACCATTATT CCTTATTGTA TTATGTTAAT AGTGTGTTTA AGCATTGAAC 
AAGCCGGAGT TCTCGTCCCT TTTTAGATTA TCACATGTGA TATGTGAAAA 
ATGACAGTTG CGTAGCTAAA AAGCAATGAC TAATAACAAA AAATGTTTGG 
ATCAATTAGA AGCATTGATG TGGAGTTGAA CGAGCGAGGC ATAAACTCCA 
CCTTCGATAT TGATCAACGT CTCGTGCGTC CCTTTCTCTG CAATCACACC 
GTTCTTGACG ACGGCGATGA CGTCAGCATT CTTGATCGTT GAAAGCCTGT 
GAGCCACCAC GATGGTGGTC CGGTTCACCA TCACCCGATC AAGCGCGTCT 
TGAACCACCC GCTCCGATTC TGCGTCCAAC GCGCTCGTCG CTTCGTCGAG 
TAACAGAATC TTCGGTTCTT TCACGATGGC GCGTGCAAT

AT1G07280.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1); Has 604 Blast hits to 369 proteins in 73 species: Archae - 4; Bacteria - 161; Metazoa - 2; Fungi - 2; Plants - 383; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07280.2

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G07280.3

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01820.1

Model type: Protein coding
Short Description: P-glycoprotein 3
Curator Summary: member of MDR subfamily
Computational Description: P-glycoprotein 3 (PGP3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 5 (TAIR:AT4G01830.1); Has 830190 Blast hits to 386538 proteins in 4151 species: Archae - 14649; Bacteria - 648558; Metazoa - 17709; Fungi - 12207; Plants - 9512; Viruses - 34; Other Eukaryotes - 127521 (source: NCBI BLink).
Link: InterPro Scan - TAIR