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13-3142-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 85026 [Map]; Strand: c
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: exon1 (CDS)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -375; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -390; Region: promoter
    Flanking Genome Sequence: 13-3142-1 - 5-prime edge 
    CTTCGAGAGA TGAGCAGCAC AAGCACTAGT TCTGCTCTTA TCCACCATTT 
    CCGCCTCACC ACTCGCAACT TGGGTTCGCC TACAAAGCAG CGTTGTCCTT 
    ACGCTGTAAC TTTCTGCAAT TCGTGGAGGG AAGCTGGACT CCGATACTCC 
    GTCACGCAAC GCCGGAGCAA AGGCTTTGGG CCGGTGTCAG CTCTCAATGA 
    CGACGATTCA CCAACAGAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 85142 [Map]; Strand: c
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -259; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -274; Region: promoter
    Flanking Genome Sequence: 13-3142-1 - 3-prime edge 
    TCTCGAAGAA TCCTCTCTCG TATCGTATGT TGTTGATTTT CAATTGCAAA 
    GAGAGCTTCA GAGAAGGAAC GATTGGTTCC GGTCGAGTTT CGTTGCCCAC 
    ATTTGATATT TTCCAAAACA ACCCAATCCT TTTTTTTTTC TCCGTTAAAC 
    CTTNTTCCAT CANAAANTNG CTAACNCAAN GTAAACAACN TCGTTTTTAG 
    GAAAAANCAA AGGANCTTNN TNGGGCCTTT TATNGNTTTA TAAGGCCCNT 
    TACTACGGCC CATAAAGTAA GTTNATNCTA GNAGNGANNA NGGGGGTNNA 
    CTTCNCAGTT NACACAAAGG GCTCCNTNGG NTNGNNAGTT TTCCCNCCAN 
    NCCNANGGGC AAANAAACTC CGGNGGAAAA ANCCNTAATT NTNNTTCGNG 
    GNAAACTCNG GNATCNTAGT TNTGTCTTCA AACCTCTTTC CGTTTNTNNA 
    AATACCAATN NCGGGTCTNA TGGCTTNCNN NACTTGNCNC TNAATTCNTC 
    NAANCAANTT TGCTTTTAAC CNAATANNNN AAACAANTTT GNCACCCCNC 
    AGGAAANTGG ANNTNNNATG GNATCCACCC NNNTNTCACC GGGGGGNANN 
    CANAAACNNC GATGTTGGCT TCTNGGCCNT CNCGGCTNTG GCAAAANCTG 
    TTNTNTGNTC TAAACCCTNG TTTCCTTATA NTCNTTTATT TCCGGGANNG 
    GGGGNNGGAT TTNTNTCTTT TTANTTNAAA AAAGGGGTGG ATTCNAGGGT 
    NTGNNTCNAG GNTNGNNGGG GAATNTNGGA A

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR