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13-2770-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24787862 [Map]; Strand: c
      • AT5G61680.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-2770-1 - 5-prime edge 
    GGCAATGTCC GGAGANCNNA GGNCCANTCN AGCNNTGGNT GNNCNGGANC 
    GNACCTTCGN TGGCTANTAN AAAAAGCACA TTAGATCCAG CATCTATTGA 
    CCGCTGAGGC TAAGCCACGC ATCATCAAGG CATGATAGTA TTTATAAACA 
    TTACTTAATA GACGTTTTGC TTATGTTAAT TTTCAACAAA TATAACACGC 
    TATTTTTTTT TAGTTCGATA TTGCGATATT TTATATGATA TCGCATTTTG 
    TATGTAGGAT TTTGGGTTTT ACACATCATA AAAATATATT TTGGATCTAC 
    NAATGCAGGT GAAACAAAAT GGAANAGGCC ATTTCAAGAC AATAACCGAA 
    GCGATAAATA GTGTACGGGC AGGGAACACT AGGCGTGTGA TCATCAANAT 
    AGGTCCTGGN GTATACAAAG AGAAGGTCAC GATAGATAGA AGCAAGCCAT 
    TCATCACACT GTACGGTCAT CCAAATGCAA TGCCGGTNTT GACATTCGAC 
    GGTACCGCAG CACAATATGG GACAGTCGAT AGCGCAACTC TCATTGTCTT 
    GTCCGACTAT TTCATGGCTG TTAACATCAT CCTTAAGGTA TTTATATCGT 
    AAGATATGTC TCAAAATTTG TGGACTAATC AAGGACAGTT TATGATTACC 
    TTACATGTGA CATTACTTTT TGAAAGAAAA AGAAAAAAAC GGCACTNTTT 
    TACAATGANA TAAATAAATT TTTGTTNNAA AAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24787944 [Map]; Strand: c
      • AT5G61680.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2770-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTACCGAAAA CCACGGGCGA TGTAATCACC ACGAGCAGGA TTGTTACTAT 
    GAGGGACACA TAATTGTATC CCATTGTACT ATTAATATTT GTTACTACTT 
    TTCTAAAGTA AAGATGATTA ACTTTCTGCT TCTTCCTTTC TTATGGTATA 
    TATATCTATA CCATCTCTAA AAGCGAAGAA TACCCGTTGC CGTTAATTTT 
    TGCTAAATTG GTTTCTGGTT CTTCACTTTT TATTCATTTT AATCCCTTAA 
    TAAACTCTAT ATATATTATG TACTGTTTTA AGTGTTTCAA TCTAACTAAT 
    TTAGTTTATT TGTCTAGAAA ACTAATTTAC TTTAAGGTGT AAAACCGACG 
    TTAGTTTTAT TTTTGGAACA AATGATTAGC TAATGCTATA TTACTAAACA 
    AGAAACTTCT CAATACTAAA CATCTAAACC GAACATGGCG TTAAGATATC 
    CCAAATAGTA TTGTGAATTA GGCATAAATC GCTATAAAAT CAACTTCAGC 
    GACTATTGTT AGTAGGATAT CTTCATATCC TTGACTATAT TTTTCAATCA 
    AGGTTCTATT TATGTATAGT CGTATATTCA CATTAACTAT GATTGTAATA 
    CCCTAGCTAC CTCTCTGTGT ATATACGACT GTACATAAAT ATAACATTGA 
    TTGATATAGT CAAAGATATG AAGATGTCGT AATACAATTG NTAGGAACTT 
    CATAGTTCAT TTGATCAAAA ATAGTGGTAT TTTTTATTCA ACCAAAAAAA 
    AGN

AT5G61680.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G69940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR