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Mutant Lines
13-2022-1

13-2022-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 460380 [Map]; Strand: c
  - AT4G01060.2 - [+] show detail - CAPRICE-like MYB3
    Distance: -92; Region: promoter
  - AT4G01060.3 - [+] show detail - CAPRICE-like MYB3
    Distance: -95; Region: promoter
  - AT4G01060.1 - [+] show detail - CAPRICE-like MYB3
    Distance: -151; Region: promoter
Flanking Genome Sequence: 13-2022-1 - 5-prime edge
```
CACACGAACC ATCATTTCTA TTTATAGCAA CTAACCAAAT CAAGTAACCA 
ACGGTCCAAC GGGTTTGGTC GGTTTCTATG TTAATTTACT AAATTGGTTT 
TGTTCTCATT AATTAAATTA ATTAATTGTT ATTGCAAGTT GCAAGTTTGC 
AACCAATAAA AACCACAAGT ACCCGTGACT TCATTTACTA CGTTGTGATG 
GCTTGGACTG GAACATAAGT TGTATAAATA TTGATACAAG CCGTTAATTA 
AGATCATTAA TAATCAACAA CAATTGTTTT CAAAGCT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 460496 [Map]; Strand: c
- AT4G01060.2 - [+] show detail - CAPRICE-like MYB3
  Distance: 0; Region: exon1 (5UTR)
- AT4G01060.3 - [+] show detail - CAPRICE-like MYB3
  Distance: 0; Region: exon1 (5UTR)
- AT4G01060.1 - [+] show detail - CAPRICE-like MYB3
  Distance: -35; Region: promoter

TTCGTGTGCA ACCTTCAAAA TACGACCACT CTCTCTTAGT TTCTTTCTTC 
TTCTTCTTTG TAATACCGTG CTGTCTGACA TGGATAACCA TCGCAGGACT 
AAGCAAACCA AGACCAACTC CATCGTGACT TCTTCTTCTG AAGGAGGTAA 
GCNTGAAAAC TTAAACACCT TCGTTTTCTA ATTTTTCCAA GTTTTTTTTA 
AAACTTTTCT CTATATATAA TGAGAAAACT GAATTTTGGT GGCGACAAGG 
AACAGAAGTG AGTAGTCTTG AGTGGGAAGT TGTGAACATG AGTCAAGAAG 
AAGAGGATTT GGTCTCTAGA ATGCATAAGC T

AT4G01060.1

Model type: Protein coding
Short Description: CAPRICE-like MYB3
Curator Summary: Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description: CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 2727 Blast hits to 2727 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2715; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01060.2

Model type: Protein coding
Short Description: CAPRICE-like MYB3
Curator Summary: Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description: CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01060.3

Model type: Protein coding
Short Description: CAPRICE-like MYB3
Curator Summary: Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description: CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR