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13-1812-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4793393 [Map]; Strand: w
      • AT5G14820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1812-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    ATCACATGAT CTCATCGTTG AGGTTTTAGA ACGTTTTCGA CATGCTAGGA 
    AGCCTGCATT TAGGTTCTTC TGTTGGGCTG CAGAGAGACA AGGATTTGCT 
    CATGACTCAA GAACATATAA CCTCCATGAT GAGTATTTTA GCAAAGACTA 
    GACAGTTCGA GACGATGGTT TCGGTACTCG AAGAGATGGG TACGAAAGGT 
    CTATTGACGA TGGAGACATT CACTATCGCG ATGAAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23107940 [Map]; Strand: w
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 3; Position: 23134854 [Map]; Strand: w
      • AT3G62540.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1812-1 - 5-prime edge 
    CTGGGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATT TCATCAAGAA CAGCTTCCAT ATTTCTATCT 
    AACGCAAACA ATTCATCAAT CACTTTGCAG ACTCTCTCTA CTTCTTCCGG 
    ATTAGTACTT GATTCAACAC AACTGACCCC AGTTTCTTCA TCATTATCGC 
    ATTCAGATTC AACTTCTTCA TCACATCCAT CACTAACATT AGAACTACCA 
    CTAGAGAAAC CTCTACACCC AAGACTCGCA TCAAGCAGTT GTACAGAGGA 
    GTGTGGCAAT GGAATTTGAC GGTAAGGATG ATAAGTAGAA GAATGAATCA 
    TACGAGAGAA GAGAGCACCG GAAAATCGTA CTTCCTCTTC TCCTCTCCCG 
    CCGATTACGC GGCTTTGACT GGAAATGAAT T

AT3G62470.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62540.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G14820.1); Has 36772 Blast hits to 11783 proteins in 282 species: Archae - 3; Bacteria - 24; Metazoa - 449; Fungi - 549; Plants - 34543; Viruses - 0; Other Eukaryotes - 1204 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14820.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 37965 Blast hits to 11999 proteins in 283 species: Archae - 3; Bacteria - 24; Metazoa - 443; Fungi - 549; Plants - 35727; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink).
Link
InterPro Scan - TAIR