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13-1393-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9245268 [Map]; Strand: w
      • AT5G26340.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 13-1393-1 - 5-prime edge
    CCTCCATCCC CAACCTCCTT TAATCCTGCA AACATTTCAA AATTTATTTA 
    GTGGGCCAAT TTTTAACTCC ATTATGGGCC TACAAATAAG CCCATTAACT
    TTTTTTTTTT TNNNNAAAAA ANCCCCTTTN CNNNNNNNNN AAAAANNTTN
    NAACCCCTTA AAAGGNAAAN NCGGGAAAAA NTTTNNTNGG NAANTNTNNA
    AAACNNGGGC NNGGGGNNAA ANTTGNCCAA ANCCCGGGAA AAAANTTTNN
    TNGGNAANTN NNNNAAAAAN GTTTTTTTTT GGGGGTTNGG NCAAAATTTT
    TNNNAAAGGT AAAGGNCTTT TTTTTNGGGA ANGGGNNNNA AANNNNTTTT
    GAAAANGGGG NAAAAAANTT TAAAAAANCC NGGGNAAANN CCNAAANGNN
    NGGCNAAANC CNNCNAAAAA TTTNGNANNN TTTTTGGGGG GGNNNGGGNA
    NNAAANTTTT TTTTTTNNNN NAAAAAAAAN AAAGGGGGGG GGNANNNAAA
    AAAAAAAANN GGGGGGGANT TTTTTAAAAA GGGGGGGNGN AAAAAAAATT
    TTTTNAAATT TTGGCCCCCC TTTTTTANTT GGGGTTTTTT TTNGGNAAAA
    AATTTTNNCC CCNNNNTTTT TTTTNCCCNC ANTTTTTTTN GNNTTTNNNN
    NNNAANTTTN AAAAAAANTT TTNGGGGGAA AAATTTTTTT GGGGGGCCCC
    AANNNAAAAA A

AT5G26340.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Curator Summary
Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.
Computational Description
MSS1; FUNCTIONS IN: carbohydrate transmembrane transporter activity, high-affinity hydrogen:glucose symporter activity, sugar:hydrogen symporter activity, hexose:hydrogen symporter activity; INVOLVED IN: response to salt stress, apoptosis, phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 7 (TAIR:AT4G02050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR