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13-1089-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3249823 [Map]; Strand: w
      • AT5G10330.2 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: 0; Region: exon1 (CDS)
      • AT5G10330.3 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: 0; Region: exon2 (5UTR)
      • AT5G10330.1 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-1089-1 - 5-prime edge 
    TTCCGGATTG AGCAAAAGGG TTTCTTCAAA GCTCGAGACT TTCGAAGATT 
    TGACTCTGAA GAATGAATAG AGAACGATGG AGAGCCCTGA ACATTGATCA 
    CACCCATCAG TTTTCGTGTC TGCGCATATC AAAGGTGGAA TCAGTTCAAT 
    CTAGAGGAAA CATCTGATGC ACATACTCAA TTTCACATCT TATTGACAAG 
    TAATACCTGA AAGTTGACAG GAAGAGGGGC AAATGGAGAT AACCCTAAGT 
    AGACGAGAAG GGTCGTGAGC AGGGAGACTA AAGTGACTGA GATCAGTCAA 
    AACCTTCGAT TTTTCTATGA CTCACTTGCG ATTCGTGGAC AAAGGTGAGC 
    CTTTTTTTTA TTCTGAGTGA CTGAGAATTG GCATACCAAT TTAGGGGTTA 
    TCCGAAATTG AATCCAAAAC CCGGTTCTGA AGAATCGGGT CGATAGTGAG 
    AGTAGGTAAN AAAGTCTTCC AAGTGTAGTG TTAAATAAAA AAGTCTACTC 
    TTGACGAGGT GAAGACGTGA GAGTAGGTCA GATCGATTTC CCGGCGATCT 
    AAAAGGAACC AGGAGCCGAT CTGCACATCG GTGACGAGGT GAAGACGTGA 
    AGCCTATGGG AATGTGATAC AGGATTAACG TGGGTGAGCT AGTGATCTGG 
    CGAGCTGGAA ATGTGAAGTC AGGGATGTTA AGCAAAGTAC GTGTTGTTAG 
    CTGGCGAGCT GN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3249702 [Map]; Strand: w
      • AT5G10330.2 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: 0; Region: exon1 (CDS)
      • AT5G10330.3 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: 0; Region: exon2 (5UTR)
      • AT5G10330.1 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: 0; Region: exon2 (CDS)
    2. Chromosome: 1; Position: 27067324 [Map]; Strand: c
      • AT1G71920.1 - [+] show detail - HISTIDINE BIOSYNTHESIS 6B
        Distance: 0; Region: exon2 (CDS)
      • AT1G71920.3 - [+] show detail - HISTIDINE BIOSYNTHESIS 6B
        Distance: 0; Region: exon2 (5UTR)
      • AT1G71920.2 - [+] show detail - HISTIDINE BIOSYNTHESIS 6B
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1089-1 - 3-prime edge 
    ATNAGGNTCA TGGGGCTCAC NTCTNCANGN GCAGCATGNA GACGAATCCA 
    AGANTATAAC TATGGGAGAC TCTTTTATCC GTNCACATTN GAGACAATTG 
    GCTGNTTATC ANCCAATTTT ACCCNTTGAG GTGATATTTA GATTGCATNG 
    AATCTATTTT TTGACAATTA TAGATGATTG GANNGGGTNG GATTGCTTNC 
    TATCGTTCNT NAAANGTGNA TGNNNGNCNT GTAATNTANN NTATCNGTNT 
    GNTNNATTAN GGAANAATNC CNCGAGGATT TGGNNNAGNN AAATGCCTNA 
    TGANAACCCA TNTGGNCCTN NTCCNTAGGC AAGNNANATA NTTTCNTTTT 
    TNCTNCNCNC ANNNANANAT NANGNNNAAA CAGGAAACNN AGATNANNTA 
    NTNNNNTTNA NNNTNGNNNC NNNTTTNNNT NAAGAGGTNA NAACTCNTTN 
    TNTCNNNGNT NNNANGNNTN CCTNNGNNNT NTNACNCCCT CCCCCTNTCG 
    GANGTTNCNN NTNANCATAT ACNCNCNCCG TNNNTANTGT NNCTTGACAC 
    NGTGNANTGN NNANTCGNNT ANNTNTANNC CTTCCCATAN TNTNNNNTAA 
    NNNNCANNNN CTANAANATT CANNAGTAAN ANNGGGCANN NNNANNGTNN 
    CNTNNNGTAN GTNNTNGTNA TATTGNCANN TTNCNTNCAN NNGT

AT1G71920.1

Model type
Protein coding
Short Description
HISTIDINE BIOSYNTHESIS 6B
Curator Summary
Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.
Computational Description
HISTIDINE BIOSYNTHESIS 6B (HISN6B); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: histidinol phosphate aminotransferase 1 (TAIR:AT5G10330.2); Has 34816 Blast hits to 34816 proteins in 2921 species: Archae - 1024; Bacteria - 25539; Metazoa - 256; Fungi - 389; Plants - 456; Viruses - 0; Other Eukaryotes - 7152 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G71920.2

Model type
Protein coding
Short Description
HISTIDINE BIOSYNTHESIS 6B
Curator Summary
Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.
Computational Description
HISTIDINE BIOSYNTHESIS 6B (HISN6B); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: histidinol phosphate aminotransferase 1 (TAIR:AT5G10330.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G71920.3

Model type
Protein coding
Short Description
HISTIDINE BIOSYNTHESIS 6B
Curator Summary
Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.
Computational Description
HISTIDINE BIOSYNTHESIS 6B (HISN6B); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: histidinol phosphate aminotransferase 1 (TAIR:AT5G10330.2); Has 35243 Blast hits to 35243 proteins in 2924 species: Archae - 1037; Bacteria - 25751; Metazoa - 263; Fungi - 377; Plants - 462; Viruses - 0; Other Eukaryotes - 7353 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10330.1

Model type
Protein coding
Short Description
histidinol phosphate aminotransferase 1
Curator Summary
Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.
Computational Description
histidinol phosphate aminotransferase 1 (HPA1); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: stem, fruit, root, flower; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 6B (TAIR:AT1G71920.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10330.2

Model type
Protein coding
Short Description
histidinol phosphate aminotransferase 1
Curator Summary
Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.
Computational Description
histidinol phosphate aminotransferase 1 (HPA1); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: stem, fruit, root, flower; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 6B (TAIR:AT1G71920.2); Has 35250 Blast hits to 35250 proteins in 2924 species: Archae - 1034; Bacteria - 25749; Metazoa - 263; Fungi - 394; Plants - 462; Viruses - 0; Other Eukaryotes - 7348 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10330.3

Model type
Protein coding
Short Description
histidinol phosphate aminotransferase 1
Curator Summary
Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.
Computational Description
histidinol phosphate aminotransferase 1 (HPA1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 6B (TAIR:AT1G71920.2); Has 35141 Blast hits to 35141 proteins in 2910 species: Archae - 1034; Bacteria - 25652; Metazoa - 263; Fungi - 377; Plants - 462; Viruses - 0; Other Eukaryotes - 7353 (source: NCBI BLink).
Link
InterPro Scan - TAIR