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13-0888-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 467917 [Map]; Strand: w
      • AT4G01080.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 26
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0888-1 - 5-prime edge 
    GTAAACACAA ACACTTTAAA CCCTAAATTA CAAATTTTGA TCGAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 467848 [Map]; Strand: w
      • AT4G01080.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 26
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0888-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTG 
    TTTACCATGT GTTTGATTAA ATGTCTGTGT GTGATTTCAT TTTTGTAGTT 
    TCATCAGCAA AGTGTGATCT TTTCACCGGA GATTGGATAC CAGATCCAAC 
    AGGTCCTCTG TACACAAATG TCACTTGTCG TCACATTCAA AATTTTCAGA 
    ACGTGTCTAT TGAATGGACG ACCAGATGTG AATTATCTCT TCTGGAGATG 
    GAAGCCTCGT GATTGTGATC TTCCTAGGTT TAGTCCATCG CAGTTTCTTG 
    CTTCAGTGAA GAACAAATGG TGGGCTTTTA TCGGTGATTC CATTGCTCGT 
    AACCATGTCC AGTCTCTCAT CTGTATTCTC TCTCAGGTTT GTTGATTCTT 
    TTATTCAGAG AATGAGTTTG GTTTTTGTGT TAATGAAAGT TTCCTTAGAC 
    TACAAGTAAG TAATCAAGAC CTTTGATTTA ACTGTCTCAG GTGGAAGAAG 
    TGGAGGAAAT CTATCACGAT AAGGAGTTCA GATCCAAGAT ATGGAGATTC 
    CCTTCTCACA ACTTCACATT ATCAGTCATT TGGTCTCCTT TCCTTCTCAA 
    ATCCGAAACA TCTAGCAACT CGGATATTCA GCTTTACCTC GACCAGCTTG

AT4G01080.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 26
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 26 (TBL26); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 25 (TAIR:AT1G01430.1); Has 1341 Blast hits to 1324 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1336; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR