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13-0550-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 58813 [Map]; Strand: c
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0550-1 - 5-prime edge 
    GNTCNGNCGG AGGCCGGCAN GCNNACNCCA CCACCGATGA GCANNCGNNA 
    TAACCATCGG GNTGGGTGAT TGGGAGGAGC ANGTTCCTCA TGACCACAGA 
    ACAGAGCATT CTCGGACTCA TCATGGGAGA TTCCACAGAT CCCTCTCTTG 
    AACTCAACAG CATTCTCCAA ACATCTCCCA CCTTCCACGA CTCTGACTAC 
    TNATNACCCG GTTTCNGAGT CGTTGACACC GGCTTCAGGT TNACACCACC 
    ACTTCTGTTC CGCCGTCACA TGTTTNCGGC CTTATGATCA ANNAAAGNAA 
    AACCCANTAC ACACANAATC CTGCGGNTAT CTTGTACGGC CACCACCACC 
    ATACACCTNC NNNNNNCANA GCGGCTCANC CCTGGTNCCG NGGGGANAAC 
    NAAGCANNGT GGTNNNGGNN NNNANAGGNC ATAAAGAGCG ACACCGTGCC 
    CTANCTCAGG GGATNTTGNG CGNGGTGTCA ANCTAANANG TTGTTTTNTG 
    CCCGNCTGGT GAGNCATNAG AAGGANNANT CNTNTNCCNT NCAANGNANC 
    GNNTGAANNT NTATCCTNCA CAACGTNGNC CCAANCCNTA AACCCANNTN 
    ANNNTCANTN TTAANAAACN ATTNTTAANA AATNNCTANT NAAAANNCTT 
    ACACNTATCA GNANTGANNN NTAGTNTACN NNANAANGTN NNNNNNTNNN 
    GNNTNTGNGT CAATNANANA NANANNTTAT NAACANTCAN ANATNNNGGN 
    NTANNGANNC AANACCNTNN TCGGATTGTT CCNANGTAAA AAACNNAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 58924 [Map]; Strand: c
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0550-1 - 3-prime edge 
    GACGGCGCTG TTTCCGCCGT GAGAGGAAGA CACCGTGGAG GAAGAGGTTG 
    GGCTTATGAG GGAGTCCAGA ACAGAGGTAG GCTCCGCCGC GGGAACTTCT 
    TCCTCTTCTT CTTCGCCGCC TCTTGCTTTG CNGGTGGCTC AAAAGCNGGA 
    GACGACNGGT GGTTGGGGGA AGGAAGACGA GAAAGAAGAG AAACAAGAAA 
    TCCCCTTCCC TTGAAACTCT TCAAAGGGTA AGGGCATTGC AGACGATAAA 
    AAATAGTGTA TTTGTCTTCT TGAAGCTCTT CTTCTTCTTC TTCTTCTTCG 
    TTGTTGTGAT GTGGTGTGGT GAGGTATATT GGATGCGTGC AAGATATTAA 
    AGTGGCAAAG TGGGCTTCCT CCTTTCTTTT TCTCTCTTAT TTCCGTTTCC 
    TATCATTTTC CCTTTGTCAT TAACTTAGCT GATTAAACAA TTCATCAGCT 
    TCTCTTACAC AACATTTTGT TAATCTTTGC TTTCTAATCT TAACTATGTC 
    TTCTATTACA ACCCCACTCT TACATCACGC GCGTGGCTTG CAAACTCCTT 
    TCAGTGACAT GAACATGATG GTAAACAAAA ATACTAAATG TTATGATATA 
    TTNTTAAATA TTGNATTTGN CTTCTTGAAT TACTANAAAC TATTAAAAAA 
    AAAANNATTT CCCCCANNTT TTTNNANNNN NCTGNNTTTT NAAANGNNTN 
    ANCNTTNCCC NAAAAAAANG GGGNNTNNNT NTNTTNGG

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR